Corvus cornix (hooded crow): 104696424
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Entry
104696424 CDS
T03546
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04115
p53 signaling pathway
ccw04210
Apoptosis
ccw05164
Influenza A
ccw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
104696424 (APAF1)
04115 p53 signaling pathway
104696424 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104696424 (APAF1)
05168 Herpes simplex virus 1 infection
104696424 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
NB-ARC
APAF1_C
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
APAF-1-like_WHD
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
CARD
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
WD40_RFWD3
Beta-prop_IFT140_1st
CARD_2
PEP5_VPS11_N
Beta-prop_SCAP
Ge1_WD40
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_DCAF12
Beta-prop_Nup120_160
WDR54
AAA_16
DUF2415
Dark_WHD
AAA_22
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
104696424
NCBI-ProteinID:
XP_010409082
LinkDB
All DBs
Position
1A:45890649..45942004
Genome browser
AA seq
1248 aa
AA seq
DB search
MDVRSRNYLLMNRQALENDIKTSYIMDRMISDEVLTLQEEERVRQQNTRKERAAMLINII
LTKDNNSYRSFYNALLHEGYRDLAALLQDGIPAISSGNRKSSMDGMTSHVKTILCEGGVP
QRPVVFVTRPKLVDAIKKKLYCLGSEPGWVTVYGMAGCGKTVLTAEALRDPQLLEDYFPG
GVHWISVGKQDKAGLLIKLQNLCSRLEHDSTLPQRPLNIEEAKDRLRLLMLRKYPRSLLV
LDDIWDSWVLKAFDNQCQVLITSRDRSVTDAVAGNKYEVHVESGLAHEKGLEILSLFVNM
KISELPEQANSLVRECKGSPLVISLIGALLRDFPNRWEYYLRQLQNKQFKRIRKSSSYDY
EALDEAMSISVEQLDDNYKDYYKDLSILPKDVKVPTKVLCILWDMETEEVEDILQEFVNK
SLLFCDRNGKSFHYYLHDLQLDFLTEKNRNQLQELHKNIVNQYKKYYKLNTPVLSQEDCM
YWYNFLAYHMAGANMQQELRDLMFSLDWIKAKTELVGPAHLIHEYVEYSSILDQKDSTVR
ENFQEFLSLNGHLLGRQPFPDIIQLGLCQPETSEVYQQAKLHAQRETGAFYLEWINKKSL
KNLYRLVVRPHRDAVYHACFSKDRQRIASCGADKTLQVFKAESGERLLEINAHDDEILCC
AFSADGEFVATCSSDKKVKVWNSRTGQCRCVYEEHSEQVNCCQFNNRSGQYLLATCSNDT
FIKVWDLNKKYCRNTMIGHENSVNHCRFSPSDEYVASCSTDGTVKLWEARSGNELKSIEI
KDFFKNADEQPDDVEVLVKCCSWSRNGDMILVGAKNKLLLFDIKTCGLLTQVIVSHHSTI
QYCDFCPGDELVAVALSHCSVELWNIKSLSKVAYCRGHMSWVHCVTFSPDGSLFLTSSDD
QTIRIWETKKVCKSSDAVLKSELDVVFHNGEVMILAIYNQKHLQLINGNTDNVIMQTAAQ
ESPISCCCLSEDLKFAAFGQESGTIKVLQLSDGKVLKSWEACRTSVQHCRFTPDCQTLIS
SAHDSVIQVWNWQLSECALLRGHKEAIKDFRLLENSKLLSWSFDGTVKVWNITTGNPEKD
FACHGGAVLSCAVSPDGSKFSSTSADKTAKIWSFESSSVLHELKDHEACVRCCTFSPNNK
LLATGDDKGEIRIWDVLTGALLHFCSPVTVDEGEPTHGGWVTDLSFSPDSKMLVSSGGYL
KWWNVTTGESLQTFYTNGTNLKSIHVSPDFKVYVTVDNLGILYVLQKF
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaggagtagaaactatttgcttatgaatcgtcaagcattggaaaatgacatc
aagacttcttatattatggatcgtatgatttctgacgaagtactaacattacaggaggag
gaaagagtgaggcagcagaatacacggaaggagcgagcagctatgctaataaacattatt
cttacaaaagataataattcatatagatccttttataatgcactgcttcatgaagggtac
agagatcttgctgcgcttcttcaggacggcatccctgccatctcgtctggtaacagaaag
agttcaatggatggaatgacttcccatgtgaagaccattctctgcgaaggaggcgtacca
cagagaccagttgtgtttgtcactcggccaaaactggtagatgctattaagaagaaactg
tactgcttgggaagtgagccaggctgggtcacagtttatggaatggcaggctgtgggaag
actgtcttaacagcagaagctttaagggatcctcagctcttggaagattactttccagga
ggagttcactggatctctgttgggaaacaggacaaagcagggctcctcataaaacttcag
aatctctgtagtagattggaacatgactccactcttccacaaaggccacttaacattgag
gaggctaaagatcgtcttcgtttgctgatgctacgcaaataccccagatctcttttggtc
ctggacgacatttgggattcctgggtgttaaaagcattcgataatcaatgtcaggttctc
atcacgagcagggacaggagtgtaacggatgctgtggctggcaataagtacgaggttcat
gtggaaagtggactagcacatgagaaaggcctggagattttatccctatttgtgaatatg
aaaatatcagaactgccagaacaagctaactcccttgtaagagaatgcaaaggttctcct
cttgtgatatccttgataggtgcattactacgagacttccctaaccgctgggaatactat
ctcaggcagctgcagaataagcagtttaaaagaataagaaaatcttcctcttatgattac
gaagcccttgatgaagcaatgtccataagtgttgagcaactggatgacaattacaaagac
tactataaagacctctctatcctcccaaaagatgttaaagtacctactaaggttctttgt
attctttgggatatggaaactgaagaagttgaagatatactacaggaatttgttaacaaa
tccctgttgttctgtgatcgtaatgggaagtcgttccattactatttacatgatcttcag
cttgactttctcacagagaagaatcgcaaccagcttcaggagctacataaaaacatagta
aatcagtacaagaaatactacaagcttaatacacctgttctgtctcaagaggattgcatg
tactggtataacttcctagcgtatcacatggcaggtgccaacatgcagcaggagctccgt
gatctgatgttttctttagattggattaaagctaaaacagaattggttgggcctgctcat
ctgattcatgaatatgtagaatatagctcaatcctggatcaaaaggatagcacagtacgt
gagaatttccaggaatttctgtccttaaatgggcaccttcttggacggcagccatttcct
gacattatccagctgggactttgccagccagagacatcagaggtgtatcaacaagccaag
ctacatgctcagagagaaacaggagcattttatttggagtggataaataaaaaatccttg
aaaaatctctaccgtctggttgttcgtccacaccgagatgcagtttaccatgcctgcttt
tctaaggataggcaaagaatagcatcatgtggagctgataaaacacttcaggtgttcaaa
gcagaaagtggagagagactcctggagataaatgcccacgatgatgaaatactctgttgc
gctttttctgcagatggtgaatttgtagcaacttgttcaagtgacaaaaaagtgaaggtc
tggaattcaagaacaggccagtgtaggtgtgtatacgaagaacactctgagcaggttaat
tgctgccagttcaataacagaagtggtcagtaccttctagccacctgctcaaatgacact
ttcatcaaagtttgggatttgaataaaaaatactgtagaaatacaatgataggtcatgaa
aattctgtcaatcactgcagattttcaccaagtgatgaatatgttgctagctgctcgaca
gatggaacagtaaagctttgggaagcacgctcaggaaatgaactgaaaagtattgagata
aaagatttcttcaaaaatgcagatgagcaaccagatgacgtggaggttttagtaaaatgt
tgctcttggtccagaaatggtgacatgattttggtgggagccaaaaataagcttttgctt
tttgatatcaaaacctgtggtttgttaactcaagtcatcgtcagtcatcacagcacaatc
caatactgcgacttctgtcctggggatgagttggtggcagttgctttgtctcactgttct
gttgagttatggaatattaagtctttatcaaaagtggcgtattgcagaggacacatgagc
tgggttcactgtgtgacattttcaccagatggatctttatttttgacttcatctgatgac
cagacaatacgcatttgggaaacaaagaaggtgtgcaagtcttctgatgctgtgctgaaa
agtgaactagatgttgtatttcacaatggtgaagtgatgattttagccatctacaatcag
aagcacttacaacttatcaatggaaatacagacaacgttattatgcagacagcagcccaa
gaatcccccatttcctgctgttgcttaagtgaagatcttaagtttgcagctttcggacag
gagagtggaacaataaaggtactacagttgtcagatgggaaggttctgaagtcctgggag
gcctgcaggacatctgtgcagcactgtcgattcacacctgattgtcagactctcatctca
agtgctcatgattcagttatacaggtatggaattggcagttgagcgaatgtgccctccta
agagggcacaaggaagccatcaaggactttagacttctggaaaattcaaaacttctctcc
tggtcatttgatggaaccgttaaggtttggaatatcactactggaaacccagaaaaagat
tttgcttgtcatggaggtgctgttctttcttgtgctgtttcacctgatggtagtaaattt
tcatctacttctgctgacaaaactgcaaagatatggagctttgaaagttcatctgttctt
catgaattgaaagaccatgaagcctgtgtgcggtgctgtactttctctcctaataacaaa
ctattggccactggagatgacaaaggagaaataaggatttgggacgttttaacgggtgca
ttacttcacttctgctccccagtcactgtagatgaaggagaaccaacacatgggggttgg
gtaacagacctctccttttctcctgacagtaaaatgcttgtgtcatctggaggctatctg
aagtggtggaatgtaactactggagaatccttacaaaccttctatacaaatggaacaaac
ctcaagtcaatacatgtgtcccctgatttcaaagtatatgtgactgttgataatcttggt
attctttatgtattacagaagttctga
DBGET
integrated database retrieval system
