Corvus cornix (hooded crow): 104697896
Help
Entry
104697896 CDS
T03546
Symbol
SLIT1
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1 protein
KO
K06838
slit 1
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccw00536
]
104697896 (SLIT1)
Glycosaminoglycan binding proteins [BR:
ccw00536
]
Heparan sulfate / Heparin
Axon guidance molecules
104697896 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
LRRCT
EGF_TEN
LRR_1
LRR_9
hEGF
LRR_14
EGF_Teneurin
LRR_EndoS
EGF_4
LRRCT_2
EGF_CA
EGF_DL_JAG
EGF_2
EGF_STAB1-2
FNIP
Motif
Other DBs
NCBI-GeneID:
104697896
NCBI-ProteinID:
XP_039409935
LinkDB
All DBs
Position
6:complement(13904979..13966310)
Genome browser
AA seq
1538 aa
AA seq
DB search
MAAPTPGXPGGVPAGLRAAAWLLVCAALCRGRAAACPPLCACSGTTVDCHGSALRAVPRS
IPRGTERLELNGNNITRINKNDFAGLKQLRVLQLMENQISMVERGAFDDMKELERLRLNR
NQLHTLPELLFQNNQALSRLDLSENFIQAIPRKAFRGATDLKNLQLDKNQISCIEDGAFR
ALRGLEVLTLNNNNITSIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGL
FTQCAAPAQLRGLNVAEIQKNEFSCSGQTDPAHAQLCSLSSGSCPAMCTCSNGIVDCRGK
GLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRS
LNSLVLYGNKITDLPKGVFGGLFALQLLLLNANKINCVRADAFQDLQNLSLLSLYDNKIQ
SLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRANPVETSGARCASPRRLANKRIG
QIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVICPPKCRCESGVVECSNLKLTKIPDRI
PQSTAELRLNNNEISILEATGIFKKLTHLKKINLSNNKVSEIEDGAFEGASSVNELHLTV
NQLESVRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQISTIAPGAFD
TLQSLSTLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFR
CEEGKEETSCIPRPQCPQECTCLDTVVRCSNKHLKALPKGIPKNVTELYLDGNQFTQVPG
QLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNSLQCIPPLAFEGLRSLRLLS
LHGNDISSLPEGIFADVTSLSHLAIGANPLYCSCNLRWLSNWVKTGYKEPGIARCAGPPD
MEGKLLLTTPAKKFECQGPPALSVQAKCNPCLSSPCQNQGTCHNDPLGSYRCACPSGYKG
RDCEVALSGCSSNPCANGGTCQPQEGEGAGFRCLCPVGFEGPSCHTTSDPCKEHSCENGG
SCVPSATNYTCLCPAHYTGEFCEQPPNFCSAELNPCQHDSTCISTSQGPRCECAPGYVGS
NCSEDFDDCQDHRCQNNARCLDEVNGYSCLCTEGYSGQLCEMPPHTAGHPGLCERAECQN
GAPCVERGARALCQCLPGFGGPKCEKLLSVNFVDRDTYLQFTDLQDWPRANITLQVSTAE
GNGILLYNGDSDHMAVELYQGHVRVSYDPGTHPSSAIYSAETINDGQFHTVELVTFDQMV
NLSIDGGSPMTMDNSGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQLLNGTSFHGCIRNLY
INNELQDFTKTRMTPGVVPGCEPXRKLYCLHGICQPSGTQGPXCHCEPGWDGPHCDQPRG
GPCQGHKCVHGLCLPLDALSYSCQCHEGYQGALCNQPAEPPDPCRHQPCVHGHCHLTPGG
QPTCECHDGYTGALCDQEPECRGEPVRDYHQVQRGYTICQTTRPVAWVECRGTCGGPDAS
CCTGLRLRRRKYAFECSNGATFVEEVEKPSKCGCSQCL
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccgacccccgggnggcccgggggggtcccggcggggctgcgggccgccgcc
tggctgctggtgtgcgccgcgctgtgccggggccgcgccgccgcctgcccgccgctgtgc
gcctgcagcggcaccacggtggactgccacggctcggccctgcgcgccgtgccccggagc
atcccccgcggcaccgagcgcctggagctcaacggcaacaacataacgcgaatcaacaag
aatgactttgctgggctgaagcagctccgtgtcctgcagctgatggaaaaccagatcagc
atggtggagcgtggggcattcgatgacatgaaggagcttgagcggctacggctgaaccgc
aaccagctgcacaccctgcccgagcttctcttccagaacaaccaggcgctgtcgcggctg
gacctgagtgagaacttcatccaggccatccccaggaaagcattccgtggggctaccgac
ctcaagaacctccaactggacaagaaccagatcagctgcattgaagatggggctttccgt
gccctgcgggggctggaggtcttgaccctgaataacaacaatatcacttcaatccctgtg
tccagcttcaaccacatgcccaagctgcgaacgttccgcctgcattccaaccatctcttc
tgcgactgccacctggcctggctctcgcagtggctgcgccagcgccccaccatcgggctc
ttcacccagtgcgctgctcctgcccagcttcgcggcctcaacgtggctgagatccaaaag
aacgagttcagctgctctggacaaacggacccagcacatgcccagctctgcagcttgtcc
tctggctcctgcccagccatgtgcacttgcagcaatggcattgtggactgtcggggcaag
gggctcacggccatcccagccaacctgcccgagaccatgacagagatacgtctggaactc
aacggcatcaagtccatccccccaggagccttctcaccctacaagaagctgcggaggata
gacctgagcaacaaccagatctcggagatcgcccctgatgccttccaggggctgcgctct
ctgaactccctggtgctgtatggcaacaagatcacggacctccccaagggtgtctttgga
ggactttttgcgctgcagctgctgcttctcaatgccaacaagatcaactgtgtgcgggca
gatgccttccaggacctgcagaacctctcgctgctctcactctatgacaacaagatccag
agcctggccaaaggcacgttcacctccctgcgggccatccagactctgcacctggcccag
aaccctttcatctgtgactgcaacctgaagtggctggcagatttcctccgtgccaaccct
gtggagaccagcggagcccgctgtgccagcccccggcgcttggccaacaagcgcatcggc
cagatcaagagcaagaagttccgctgctcggccaaagagcagtacttcatcccagggaca
gaggattaccagctgaacagtgaatgcaacagtgacgtgatttgccccccaaaatgccgc
tgtgaatccggtgtggtcgagtgctccaacctgaaactcaccaagatcccagatcgcatc
ccacagtccacagctgagctacgcctgaacaacaatgaaatctccatcctggaggccact
ggcattttcaagaaactcacacatctgaagaaaatcaacctcagcaacaacaaggtgtca
gaaattgaggatggggcattcgagggggcatcctctgtcaacgagctgcacctcactgtc
aaccagctggagtctgtgcggagcggcatgttcaggggcctggacgggctgaggacacta
atgctgaggaacaaccgcatcagctgcatccacaacgacagcttcacagggctgcgcaac
gtgcgcctgctctccctgtacgacaaccagatcagcacaattgcaccgggtgcctttgac
acgctgcagtccctctccacactgaacctgctcgccaaccccttcaactgcaactgccag
ctggcctggctgggggactggctgcgcaagaggaagatcgtgacagggaaccctcggtgc
caaaaccccgacttcctccggcagatcccactccaggatgtggctttccccgacttcagg
tgtgaggaaggtaaggaggagaccagctgcatcccccggccccagtgcccacaggaatgc
acctgcctcgacactgttgtccgctgcagcaacaagcacctcaaggccctgcccaagggg
atccccaagaatgtcacagagctctacctggatggaaaccagttcactcaggtcccgggg
caactctctaccttcaagtatctgcagcttgtcgatctgagcaacaacaagatcagctcc
ctgagcaactcctccttcaccaacatgagccagctcaccaccctgatcctcagctacaac
tccctgcagtgcatccctccgctggccttcgagggcctccgctccctgcggctgctgtct
ctccatggcaatgacatttccagcctccctgagggcatcttcgcagatgtcacctccctt
tcccacctagccattggggccaaccccctgtactgcagctgcaacctgcgctggctctcc
aactgggtcaagacgggctacaaggagccaggcattgcccgctgcgctgggccccctgac
atggaaggaaagctgctgctcaccacccctgccaagaaatttgagtgccaaggcccaccc
gccctgagcgtccaggccaagtgcaatccctgcctctccagcccctgccagaaccagggc
acctgccacaatgacccccttggctcctaccgctgcgcctgtcccagtggctacaagggc
agggactgcgaggtggcactcagtggctgctcctccaacccctgcgccaacgggggaacc
tgccagcctcaggagggggaaggagctgggttcaggtgcctgtgcccagtgggcttcgag
ggcccaagctgccacaccaccagcgacccctgcaaggagcacagctgcgagaatgggggc
tcctgtgtgcccagtgccaccaactacacctgcctttgtcctgcccactacacaggggaa
ttctgtgaacagcctcccaatttctgctcagccgagctcaacccctgccagcatgactcc
acctgcatctccaccagccaggggcccaggtgtgagtgtgcacccggctacgtggggagc
aactgcagtgaggacttcgatgactgccaggaccaccggtgccagaacaacgcccgctgc
ctggatgaggtgaacggctactcctgcctctgcaccgagggctacagtggccagctctgt
gagatgccaccccacactgctggccaccctggcctctgtgagcgagccgagtgccagaac
ggggccccatgtgtggagcggggtgcccgcgccctttgccagtgcctgcctggtttcggc
ggccccaaatgtgagaagctgctgagcgtcaacttcgtggaccgtgacacgtacctgcag
ttcactgaccttcaagactggccccgggccaatatcacccttcaggtctccacggctgaa
ggcaatggcatcctgctgtacaacggtgacagtgaccacatggctgtggagctgtaccag
ggccatgtgagggtgagctatgaccctggcacccaccccagctcggccatctacagtgct
gagaccatcaacgacgggcagttccataccgtggagctggtgacctttgaccagatggtg
aacctgtccattgatggtggcagccccatgaccatggacaactcgggcaagcactacacg
ctgaacagtgaggctcccctctacgtgggaggaatgcctgtggatgtcaactcggctgcc
ttccgcctctggcagctcctcaatggcaccagcttccatggatgcatccgcaacctctac
atcaacaacgagctgcaggacttcaccaagacgcggatgacgccgggggtggtgccgggc
tgcgagcccntccgcaagctctactgcctgcacggcatctgccagccctcgggcacccag
ggcccgntctgccactgcgagcctggctgggatgggccccactgcgaccagccccgcggc
ggtccctgccaggggcacaagtgtgtgcacgggctgtgcctgcccctcgacgccctctcc
tacagctgccagtgccacgagggctaccagggtgcgctctgcaaccagcctgccgaacca
cccgacccctgccgccaccagccctgtgtccatggccactgccatctcaccccaggtggc
cagcccacctgcgagtgccacgatggctacactggagccctctgtgaccaagagccagag
tgccgcggggagccagtgcgggactaccaccaggtgcagcggggctacaccatctgccag
acgacgcggccggtggcctgggtggaatgccgggggacctgcggtggccctgacgccagc
tgctgcactgggctgcggctccggcgcaggaaatacgccttcgagtgcagcaacggtgcg
acctttgtggaggaggtggagaagcccagcaagtgcggctgcagccagtgtctgtga
DBGET
integrated database retrieval system
