Corvus cornix (hooded crow): 104698500
Help
Entry
104698500 CDS
T03546
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccw04040
]
104698500 (SCN4A)
Ion channels [BR:
ccw04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104698500 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Lustrin_cystein
Cytadhesin_P30
Motif
Other DBs
NCBI-GeneID:
104698500
NCBI-ProteinID:
XP_019135475
LinkDB
All DBs
Position
27:complement(3057011..3099444)
Genome browser
AA seq
1847 aa
AA seq
DB search
MAGLPHIPGPENLRPFTPASLAAIEQRMAEAEALRIKRQQVEMPEEEEVKPSSDLEAGKN
LPLIYGDPPLELIGIPLEDLDPFYKDKKTFIVLNKGKSIFRFSATPALYMLGPFHPIRRG
AIKVLIHSLFSMFIMITILTNCVFMTLSNPPAWSKNVEYTFTGIYTFESLIKILSRGFCI
DDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPPPNITFLEDLGLDNNTLVN
STFYNFMDDFTENFTGDFTGNFTGNFTSNSTFDFEAYINDEGNYYFLEGALDALLCGNSS
DAGKCPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYM
IFFVVVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQLLEQLKKQQEEQEK
QLQERTSSSDSLPSSVAGKGHDSDLNSDQDKAKDCNGQVVPKITLQRSNTVIDFNPTYEP
EKSDLNHLTVGNQEGPGLEKRVGSAISVISNAVEELEEAHQKCPPWWYKFAHTFLVWNCC
PPWVKLKEFVKLVVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLSVGNLVFTGIF
TAEMVLKLIALDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAK
SWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYIECVCKISVDCTLPR
WHMNDFFHSFLIVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALL
LSSFSADSLAASDDDGEMNNLQIAIGRITRGIAFAKATLLALLRRLWKGKKVAPEEEQDP
SKRDNSVLNHVDTAPEPKPGYLDGITGKEHIFMDELDHMNFINNPNLTVQVPIASEESDL
YEETSTQSDTEDTTKNPLSSDNASSVCSTVDYKPPAPEEEEVAEAAEESNEPEECFTEGC
VKRFPCLYVDITSEKGKIWWNLRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQH
KVIRTILEYADKVFSYVFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLISLTANWLG
YSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMG
VNLFAGKYYRCVNTTTGVVFDIDVVNNKSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLL
QVATFKGWMDIMYAAVDSREIEEQPQYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNF
NQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKFQGKVFDFVTKQVFDIT
IMILICLNMVTMMVETDDQSELKTSVLYKINLVFIVIFTGECVLKMFALRYYYFTVGWNI
FDFVVVILSILGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMS
LPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSMICLFQITTSAGW
DGLLNPILNSGPPDCDPELENPGSSVKGDCGNPSIGIFFFCSYIIISFLIVVNMYIAIIL
ENFNVATEESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLRIPKPNK
IKLVTMDLPMVAGDKIHCLDILFALTKEVLGDSGEMDALKATMEEKFMAANPSKVSYEPI
TTTLKRKHEEVCATKIQRAFRRYLLRRSVKQASYMYRHSQDPLGEDAPEKEGLIATKMQE
IYGNTGTDVETAPALGLEPIPSSETRQDAPEEARAWDKERVVKESLV
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctgccgcacatcccgggccccgaaaacctgcgccccttcaccccggcctca
ctggccgccatcgagcagcgcatggccgaggccgaggcgctccggataaagcggcagcag
gtggagatgcccgaggaagaggaggtcaagcccagcagtgacctggaagccggcaagaac
ctgcccctcatctatggtgacccacccctggagctcatcgggatccccctggaggacctg
gaccctttctacaaggacaagaagacgttcatagtcctcaacaagggcaagtccatcttc
cgcttctcggccacccctgccctctacatgctggggcccttccaccccatccgcagagga
gccatcaaagtcctcatccattcattattcagcatgttcatcatgatcaccattttaacc
aactgcgtgtttatgacgctgagcaaccccccggcatggtccaagaacgtggaatacacc
ttcactgggatctacaccttcgagtctctcatcaagatcctgtcgagaggcttctgcatc
gacgacttcacattcctgcgtgacccgtggaactggctggacttcatggtcatctccatg
gcctacattaccgagttcgtggacctggggaacatctccgctctcaggaccttccgtgtc
ctccgtgccttgaaaaccatcacggtgataccagggctgaagacgatcgtgggggctctg
atccagtcggtgaagaagctctcggacgtgatgatcctcacggttttctgcctgagcgtc
ttcgccctcatcggcctccagctcttcatgggcaacctccggcagaagtgtgtgcggtgg
ccaccccccaacatcaccttcctggaggatttgggattggacaacaacaccttggtcaac
tcaaccttctacaacttcatggatgacttcaccgagaacttcactggggacttcactggg
aacttcaccgggaacttcaccagcaacagcacctttgacttcgaggcctacatcaacgac
gaagggaattactacttcctggagggagccctcgatgcgctgctctgtgggaacagcagc
gacgccgggaagtgccccgagggctacgagtgcatgaaggccgggaggaaccccaactac
ggctacaccagctacgacaccttcagctgggccttcctggccctcttccgcctcatgacc
caggactactgggagaacctcttccagctgacactgcgggcagcagggaaaacctacatg
atcttctttgtggtggtcatcttcctgggctccttctacctcatcaacctcatcctggcc
gtggtggccatggcttacgccgagcagaatgacgccaccatgctggaggagcagcagaag
gaggaggaattccagcagctcctggagcagctgaagaagcagcaagaggagcaggaaaag
cagttgcaggagcgcacgtccagcagcgattccctgcccagcagcgtggccggaaagggg
catgactcggacctcaacagtgaccaggacaaggccaaggactgcaacgggcaggtggtg
cccaagatcaccctgcagagatccaacaccgtgatcgatttcaaccccacctatgagccg
gagaagtcggacctcaatcacctcactgtgggcaaccaagaagggccagggctggagaag
agggtgggaagtgccatcagtgtcatctccaacgctgtggaagagctggaagaagctcac
cagaaatgcccaccctggtggtacaaatttgcccacacattcctggtctggaattgctgc
cctccgtgggtgaagctgaaggagtttgtcaagctggtggtgatggaccccttcgtggac
ctgggcatcaccatctgcatcgtgctcaacaccctcttcatggccatggagcactatccc
atgacggaggagttcgagaacgtgctgagcgtggggaacctggtcttcacagggatcttc
acggcggagatggtcctgaagctcattgctctggatccctacgagtatttccagcagggc
tggaacatcttcgacagcttcatcgtcactctgagcctggtggagctgggcttggccaac
gtgcaggggctctccgtgcttcgctccttccgcctgctgagggttttcaagctggccaag
tcctggcccaccctcaacatgctcatcaagatcatcggcaactccgtgggcgccctgggc
aacctcacgctggtcctggccatcatcgtcttcatcttcgccgtggtggggatgcagctc
ttcggcaagagctacatcgagtgcgtgtgcaagatctcggtggactgcaccctgcctcgc
tggcacatgaacgacttcttccactccttcctcattgtcttccgcatcctctgcggggag
tggattgagaccatgtgggactgcatggaggtggccggccagaccatgtgcctcatcgtc
ttcatgatggtcatggtcatcgggaacctcgtggtgctaaacctgttcctggctctgctg
ctgagctccttcagtgccgacagcctggcggcgtcagacgacgacggggagatgaacaac
ctgcagatcgccatcggccgcatcacccgcggcatcgccttcgccaaggccacgctgctc
gcgctgctccgccggctctggaagggcaagaaggtggcaccagaggaagagcaggacccc
agtaaaagggacaactccgtgctcaaccatgtggacacggccccggagcccaagccgggg
tacctggatggtatcacagggaaggagcacatcttcatggatgagctggaccacatgaac
ttcatcaacaaccccaacctgacggtgcaggtccccatcgcctctgaggagtccgacctc
tacgaggagaccagcacccagtccgacaccgaggacaccaccaagaaccccctgtccagc
gacaacgcctcatccgtgtgcagcacagtggattacaaaccccccgcgcccgaggaggag
gaggtggccgaggcggccgaggagagcaacgagcccgaggaatgtttcaccgaaggctgt
gtgaagaggtttccctgcctctacgtggacatcaccagtgagaaggggaagatttggtgg
aacctcaggaagacctgcttccgcatcgtggagcacgactggttcgagaccttcatcgtc
ttcatgatcctcctcagcagtggggcactggctttcgaggacatctacatcgagcagcac
aaggtgatccgcaccatcctggaatacgcagacaaggtcttctcctacgtcttcgtcatc
gagatgctgctcaagtgggtggcctacggcttcaaggtgtacttcaccaatgcctggtgc
tggctggatttcctcattgtggatgtgtccctcatcagcctgacagcaaactggctggga
tactccgagctgggagccatcaaatccctgcggacactgagggctctgcgacccctgcgt
gccctgtcccggtttgagggcatgagggtggtggtgaacgccctgctgggcgccatcccc
tccatcatgaacgtcctgctggtctgcctcatcttctggctgatcttcagcatcatgggg
gtgaacctgttcgcggggaagtactacaggtgtgtcaacaccaccacgggcgtggtcttc
gacatcgacgtggtcaacaacaagagcgactgcatggccctgctccacaccaacgaggtc
agatgggtcaacgtcaaggtcaacttcgacaacgtgggcttgggatacctgtccctgctg
caggtggcaaccttcaaaggctggatggacatcatgtacgcagccgtggactcacgcgag
attgaagagcagccgcagtacgagatcaacctctacatgtacatctacttcgtcatcttc
atcatcttcggtgccttcttcaccctgaacctcttcatcggcgtcatcatcgacaacttc
aaccagcagaagaaaaagtttggaggcaaagacatcttcatgacggaagagcagaagaaa
tactacaatgccatgaagaagctgggatccaagaaaccccagaagcccatccccaggcca
tcgaacaaattccaagggaaggtgttcgacttcgttaccaagcaagtgtttgacatcacc
atcatgatcctgatttgcctgaacatggtgaccatgatggtggaaacagatgaccagagc
gagctcaaaacctctgtcctctacaagataaacctggtcttcatcgtcatcttcaccggg
gagtgcgtgctcaagatgttcgccctgcgctactactacttcactgtgggctggaacatc
ttcgacttcgtggtggtcatcctctccatcctgggtattgtcctctcggacatcatcgag
aagtactttgtgtcccccaccctcttcagggtcatccggctggcgaggatcggccgcgtg
ctgcggctgatccgaggagccaaaggcatccggacgctcctctttgccctaatgatgtcc
ctgcctgccctgttcaacatcggcctcctgctcttcctcgtcatgttcatctactccatc
ttcgggatgtccaactttgcctacgtcaagaaggagtcggggatcgatgacatcttcaac
ttcgaaaccttcgggaacagcatgatctgcctcttccagatcaccacgtcagcagggtgg
gatgggctcctcaaccccatcctcaacagcggccccccggactgcgaccctgagctggag
aaccccgggagttctgtgaaaggagactgcgggaacccctccatcggcatcttcttcttc
tgcagctacatcatcatctccttcctcatcgtggtgaacatgtacatcgccatcatcctg
gagaacttcaacgtggccacggaggagagcagcgagcccctctgcgaagacgattttgaa
atgttttatgaaacttgggagaagtttgacccagacgccacccagttcatcgcctacagc
accttgtctgactttgtggacaccttgcaggagccactcagaattcccaagcccaacaag
atcaaactcgtcaccatggatctaccaatggttgctggggacaaaatccactgcctagac
atcctctttgccctgactaaggaagtgctgggagactcaggagagatggatgccctgaag
gccaccatggaggagaagttcatggctgccaacccctcgaaggtttcctatgaacccatc
accaccaccctgaagaggaaacacgaggaggtctgtgctaccaagatccagagggctttc
cggaggtacctcctgaggcgctcggtgaagcaggcgtcctacatgtacaggcacagccag
gaccccctgggcgaggacgcgcctgagaaggaagggctgatcgccaccaaaatgcaggag
atctatgggaacactgggacagacgtggagacagcccctgccttgggcctcgagcccatt
cccagctcagagacgcgccaggatgctcctgaggaagcacgagcttgggataaggaacgc
gtggtgaaagagtcgctggtgtag
DBGET
integrated database retrieval system
