Corvus cornix (hooded crow): 104698532
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Entry
104698532 CDS
T03546
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104698532 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104698532 (EFTUD2)
Spliceosome [BR:
ccw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104698532 (EFTUD2)
Complex C
U5 SnRNP specific factors
104698532 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
104698532
NCBI-ProteinID:
XP_039421776
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All DBs
Position
27:complement(2333660..2355264)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGEHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggcccgagctggactcggac
gatgatgacgacgagctgggccgagagtccaaagacctggacgagctggaggatgatgat
gatgatgatgacatgggggagcacgatgaggagcaccccgggatggaggtggtgctgcac
gaggataagaagtactaccccacagcagaggaggtctatgggcctgaggtggagaccatt
gtgcaggaggaggacacacagccactcactgagcccattatcaaacctgtgaaaaccaag
aagttctccctgatggagcagacgctgccggtcactgtctacgaaatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcaccttcaccat
ggcaagacgtgttttgttgactgcctgatagaacagacgcacccggaaatccggaagcgc
tacgaccaggatctctgctacactgatatattgttcacagagcaggagaggggggtgggg
atcaagagcaccccagtgacgattgttctgccggacaccaaaggaaagtctttcctcttc
aacatcattgacactccaggtcacgtgaacttttctgacgaggtgacagccggccttcgc
atctcggatggcgtcgtgctcttcatcgacgcggccgagggggtgatgctgaacacagag
aggctgatcaagcacgcggtgcaggagaggctggcagtgactgtgtgcatcaacaagatc
gacagactcatcctggagctgaaactgccccccacagatgcttattacaaactcagacac
atcgtagatgaagttaatgggctgatcagcatgtattccaccgacgagaacctcgtgctg
tctccccttctggggaacgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgcg
aagcggctttggggcgacatctacttcaacccgaagacccgcaagttcaccaaaaaggcc
ccgacgagcagttcccagcgcagctttgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggacgtggacacgaccctgcccaggactctggatgagcttggc
atccacctgaccaaggaggaattgaaactgaacatccggcccctcctgcggcttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacatcccctcc
ccgaaggtgggggccaagacaaaaatcgagcacacctacaccggcggcgtggactccgac
ctgggggaggccatgagcgagtgcgaccctgacggtcccttgatgtgtcacacaaccaaa
atgtacagcactgatgatggtgttcagttccacgcctttggcagggtgctcagcggcacc
atccacgctgggcagcctgtgaaggtccttggggaaaactacaccctggaagatgaggag
gattcccagatctgcaccgttggacgcctctggatctctgttgcaaggtatcacattgag
gtgaacagggttcctgctggcaactgggtgctgatcgagggcgtggaccagcccatagtg
aagacggcgacagtgacggagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacgtctgttatcaaaatagccgtggagccagtgaacccctcagagctg
cccaaaatgctcgatggtctccgcaaagtcaacaagagctacccctcacttacaaccaag
gtggaagagtctggggagcatgtgatcctgggaacaggagagctgtacctggactgtgtg
atgcatgatctgcgcaagatgtactccgagattgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcccctggagaagggactggcagaggacatt
gagaacgaagtggtgcagatcacgtggaacagaaagaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggccttcgggccagatgccact
ggcccaaacatcctggtagatgacaccctgccctcagaggtagacaagtctctgctgggc
tcggtgaaggacagcatcgtgcagggcttccagtgggggaccagggaagggcccctctgt
gatgaattgatccgcaacgtgaagttcaagatcctggacgcggtgattgctcaggagccc
ttgcaccgaggtggagggcagatcatccccacagcccgcagggttgtgtactctgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggtgcaggcccctgcc
gactgcgtgtccgccgtgtacacggtgctggcccggcgcagaggccacgtgacgcaggat
gctccgatcccaggctctccgctctacaccatcaaagccttcatcccagccattgactcc
tttgggtttgagacagatttgaggacccacacacagggacaagccttctctctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccggccg
ctggagccgcagccagccccacacctggccagggagttcatgatcaagaccaggcgtagg
aagggcctgagtgaggacgtgagcatcagcaagttcttcgacgaccctatgttgctggaa
ctggccaagcaagatgtcgttctcaactaccccatgtga
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