Campylobacter coli RM4661: YSS_06870
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Entry
YSS_06870 CDS
T03166
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccy
Campylobacter coli RM4661
Pathway
ccy03030
DNA replication
ccy03410
Base excision repair
ccy03420
Nucleotide excision repair
ccy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YSS_06870
03410 Base excision repair
YSS_06870
03420 Nucleotide excision repair
YSS_06870
03430 Mismatch repair
YSS_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccy03032
]
YSS_06870
03400 DNA repair and recombination proteins [BR:
ccy03400
]
YSS_06870
Enzymes [BR:
ccy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YSS_06870
DNA replication proteins [BR:
ccy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YSS_06870
DNA repair and recombination proteins [BR:
ccy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YSS_06870
NER (nucleotide excision repair)
GGR (global genome repair) factors
YSS_06870
MMR (mismatch excision repair)
DNA ligase
YSS_06870
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YSS_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
BRCT_2
N-glycanase_N
Motif
Other DBs
NCBI-ProteinID:
AHK77225
LinkDB
All DBs
Position
complement(1289171..1291114)
Genome browser
AA seq
647 aa
AA seq
DB search
MTKKEYLEKVALAASWMRAYYEKDEPLASDAEYDALIRELRAFEEQNENEISPDSPTQKI
APTIQSEFKKLSHLSRMWSMEDVFDESELRAWAKRARCEENFFIEPKFDGASLNLLYDKG
RLVSGATRGDGEIGEDITLNVLEIDNIPKTINYKEKIEIRGEVVILKDDFEKINEKRARL
NQSLFANPRNAASGSLRQLDTSITRERNLKFYPWGVGQNSLEFSKHSEIMSFIRELGFLK
DDFVKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGHTVKFPKFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLDAKIND
FVSVIRSGDVIPKITKVFKERRDGLELDIARPRFCPTCKSELLDEGTLIKCQNIDCEDRL
VNSIIHFVSKKCLNIDGLGESIVELLFKEKKITTLESIFHLKFSDFEGLEGFKEKKINNI
LNAIEQARDCELFRFITALGIEHIGEVAAKKLALSFGKEWHKQSLEAYANLEGFGEQMAL
SLCEFSRVNSARIDEFYKLLNLKEQKLQIQEDSVIFGKTFVITGTLSRPRDEFKNLIESL
GGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENEFNELIEK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaagagtacttagaaaaagttgccttggctgcttcttggatgagggcgtat
tatgaaaaggatgagcctttagcaagtgatgcagaatacgatgctttgattagagaatta
agagcttttgaagagcaaaatgaaaatgaaatttctcctgattctcctacgcaaaaaata
gcccctactatacaaagcgaatttaaaaaactttctcatttaagccgtatgtggtcgatg
gaagatgtttttgatgagagtgagcttagagcatgggcaaagcgtgcaagatgtgaagag
aatttttttatagagcctaaatttgatggagcaagcttaaatttgctttatgataaaggt
agactggtaagcggcgcgacaagaggagatggggagataggtgaggatatcacgcttaat
gtgcttgaaatcgacaatatcccaaaaactataaactataaagaaaagatagaaattcgc
ggtgaagtggtgattttaaaagatgattttgaaaaaatcaatgaaaaaagagcccgttta
aaccaaagcttgtttgccaatccacgcaatgccgcaagtgggagtttaagacaacttgat
acaagcatcacaagagaaaggaatttgaaattctatccttggggagtggggcaaaactca
cttgaatttagtaaacacagcgagattatgagttttataagagagcttggctttttaaaa
gatgattttgtaaagctttgtgcaaatttagatgaggttttaaaagcctataacgagctt
ttaagcctaagagatcaaaagcctatgatgatggatggaatggtagtaagggtagatgat
cttgcgctttgcaaagagctaggtcatactgtgaaatttccaaaatttatggcagctttt
aaatttccagccttggaaaaaaccacgcgtttaataggggtaaatttgcaggttggaaga
agcggggttatcactcctgtggcggttttagagcctgtaaatttagatggggttatcgta
aaatctgccacacttcataattttgatgaaattgcaagacttgatgcaaagatcaatgat
tttgtaagcgtgataagaagtggtgatgtgataccaaaaatcactaaagtttttaaagag
cgtagggatggcttagagcttgatatagctagacctcggttttgccctacttgcaaaagc
gaacttttggatgagggaactttgatcaaatgtcaaaatattgattgtgaagataggctt
gtaaattctatcattcattttgtttctaaaaaatgtttaaatatcgacgggcttggagaa
agtatagtcgaacttttatttaaagagaaaaaaataaccacccttgagagtatttttcat
ctcaaatttagtgattttgaaggcttggaaggttttaaagaaaaaaagatcaataatatt
ttaaatgccattgaacaagcaagggattgtgagctttttcgttttatcactgctttgggg
atcgagcatattggagaagtggctgctaaaaagctagctttaagttttggtaaagaatgg
cataaacaaagtttggaagcttatgcaaatttagaaggttttggtgagcaaatggctctt
tctttgtgtgagttttctcgtgtaaatagtgcaagaattgatgagttttataagctttta
aatttaaaagagcaaaaactacaaattcaagaagatagtgttatttttggcaagactttc
gtgatcacaggcacgctttcacgccctagagatgagtttaaaaatttaatagaaagcctt
ggaggcaaggttagtggatcagtttctaaaaagactgattatgtgctttttggtcaagaa
gcaggctcgaaactcgacaaggctcaagagttgggtgtaaaatgtattgatgagaatgaa
ttcaatgagcttattgaaaaataa
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