Sinomonas cyclohexanicum: SCMU_13590
Help
Entry
SCMU_13590 CDS
T07918
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccyc
Sinomonas cyclohexanicum
Pathway
ccyc03030
DNA replication
ccyc03410
Base excision repair
ccyc03420
Nucleotide excision repair
ccyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCMU_13590 (ligA1)
03410 Base excision repair
SCMU_13590 (ligA1)
03420 Nucleotide excision repair
SCMU_13590 (ligA1)
03430 Mismatch repair
SCMU_13590 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccyc03032
]
SCMU_13590 (ligA1)
03400 DNA repair and recombination proteins [BR:
ccyc03400
]
SCMU_13590 (ligA1)
Enzymes [BR:
ccyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCMU_13590 (ligA1)
DNA replication proteins [BR:
ccyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCMU_13590 (ligA1)
DNA repair and recombination proteins [BR:
ccyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCMU_13590 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCMU_13590 (ligA1)
MMR (mismatch excision repair)
DNA ligase
SCMU_13590 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCMU_13590 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BCT75517
LinkDB
All DBs
Position
1468029..1470452
Genome browser
AA seq
807 aa
AA seq
DB search
MSAEAAKTQAAGTQAPSVDGANAEAVNDGAVVPSESLRDEYDALADEVRKHRALYYNEDT
PVISDAEYDALFRSLEEFEALHPELVANDSPTQEVGGEATAAFAPVQHLARMYSLEDVFS
IEELEAWIRRAEASVAALGLPPAKWLTELKIDGLAINLLYRNGELVRAATRGDGRTGEDV
THNVLTIKDIPTRLAGEGHPEEVEIRGEVYIPTKAFNEFNDALIADGRAPLANPRNAAAG
SLRQKDPAETAKRPLSMFVHGIGAREGLAAASQAETYELLKAWGLPTSPYYEVLDTYEQV
LAFITKYGEKRHSLIHEIDGIVVKADDFATQRALGHTSRVPRWAVAFKYPPEEVHTKLLD
IQVNVGRTGRVTPYGVMEPVKVAGSTVEMATLHNQDVVKAKGVKIGDIVVLRKAGDVIPE
IVGPVLALRDAQDPPVRDFVMPTECPSCGTPLAPSKEGEVDIRCPNARSCPSQLRERVFH
LAGRGAFDIEALGWEAAIALTSGPGPDPATIGGRPQPSGPGVLDGEARIFELAADWSDAT
LRDALADVMVWREKRAKGAGTGQWDLVPYFWTKPTAKKPSVPTASTEKLFAEVEKAKTQP
LWRVLVGLSIRHVGPTASRALATRYGSMRALREVLAAGDAREQLADVDGVGPIIADALIE
WFAEDWHRDIVDRWAAAGVKMEDEQHASVGRTLEGLTIVVTGSLEGFSRDEAKEAIIIRG
GKASGSVSKKTDYVVAGESAGSKLDKAEQLGVPVLDEAGFRRLLDEGPAPAAEPDEAAPT
HDDGAGATSRGELAAEIGEAEAEGEGE
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcagaagcagccaagacccaggcagccggcacccaggccccgagtgtcgacggg
gcgaacgccgaggcggtgaacgacggggccgtggtcccgtccgagtcgctgcgcgacgag
tatgacgcgctcgcggacgaggtccgcaagcatcgtgcgctgtactacaacgaggacact
ccggtcatctcggacgctgagtacgacgcgctcttccgcagtctcgaggagttcgaggcc
ctccatcccgagctcgtggccaacgactcgcccacccaggaggtcggcggtgaggcgacc
gccgcgttcgccccggttcagcacctggcgcggatgtacagcctcgaggacgtcttctcg
atcgaggagctcgaggcgtggatccgccgggccgaggcgagcgtcgcggccctcgggctg
ccgcccgccaagtggctcaccgagctcaagatcgacggcctcgcgatcaacctgctgtac
cgcaacggcgagctcgtccgggcggcgacccgcggcgacggccgcaccggcgaggacgtc
acccacaacgtcctgaccatcaaggacatccccactcgcctcgccggagagggccacccc
gaagaggtggagatccgcggcgaggtctacattcctacgaaggccttcaacgagttcaat
gacgcgctcatcgcggacggcagggctccgctcgccaacccgcgcaacgccgccgccggg
tcgctgcgccagaaggaccctgccgagacggccaagcggcccctgagtatgttcgtgcat
ggcatcggcgcacgcgaaggcctcgccgccgcgagccaggctgagacctacgagctcctc
aaggcgtggggcctgcccacgagtccgtactacgaagtcctcgacacgtacgagcaggtc
ctcgccttcatcacgaagtacggcgagaagcgtcacagcctgatccacgagatcgacggc
atcgtggtcaaggccgacgatttcgccacccagcgggcactcggccacacctcgcgcgtg
ccgcgctgggcggtcgcgttcaagtacccgcccgaggaggtccacaccaagctcctcgac
atccaggtcaacgtgggccgcacgggccgcgtcacgccgtacggggtcatggagccggtc
aaggtcgcgggctccacggtcgagatggccacgctgcacaaccaggacgtggtcaaggcc
aagggggtcaagatcggcgacattgtcgtgctgcgcaaggccggcgacgtgatccccgag
atcgtgggtcccgtcctcgcgctgcgcgacgcgcaggatccccctgtccgcgacttcgtc
atgcccaccgagtgcccctcatgcggcaccccgcttgcgccgagcaaggagggcgaggtg
gacatccgctgccccaacgcccggtcgtgcccgtcccagctgcgggagcgcgtcttccac
ctcgcagggcggggcgcgttcgacatcgaggcgctcggctgggaggccgcgatcgccctc
acctcgggccccgggccagaccccgcaacgattgggggccggccgcagccctccgggccg
ggcgtgctggacggcgaggcccggatcttcgagcttgccgccgattggtccgacgcgaca
ctgcgtgacgcgctcgctgacgtcatggtctggcgggagaagcgcgccaagggcgccggc
actgggcagtgggaccttgtcccgtacttctggaccaagccgacggccaagaagccgtcg
gttccgaccgcctcgaccgagaagctcttcgcagaggtcgagaaggccaagacgcagccg
ctctggcgggtgctcgtgggcctctcgatccggcacgtggggccgacggcgtcgcgcgcc
ctcgcgacccggtacggctcgatgagggccctccgcgaggtcctcgcggcaggcgacgcg
cgggaacagctcgccgacgtcgacggcgtgggccccatcatcgccgacgccctcatcgag
tggttcgccgaggactggcaccgcgacatcgtggaccgctgggccgccgccggcgtgaag
atggaggacgagcagcacgcctcggtgggccgcacgctcgagggcctgaccatcgtcgtc
accggcagcctcgagggcttcagccgcgacgaggcgaaggaggcgatcatcatccgtgga
ggcaaggcgtccgggagcgtctcgaagaagaccgactacgtcgtggcgggcgagagcgcc
ggctcgaagctcgacaaggccgagcagctcggagtcccggtcctcgacgaggccggcttc
cgcaggctgctcgacgagggcccggcccccgcagccgagccagacgaggctgccccgacg
cacgacgacggtgctggcgccacctcgcgcggcgagctcgccgcggagatcggcgaggca
gaggcagaaggagagggcgaatga
DBGET
integrated database retrieval system
