Corynebacterium cystitidis: SAMEA4530656_1325
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Entry
SAMEA4530656_1325 CDS
T07131
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccys
Corynebacterium cystitidis
Pathway
ccys03030
DNA replication
ccys03410
Base excision repair
ccys03420
Nucleotide excision repair
ccys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4530656_1325 (ligA)
03410 Base excision repair
SAMEA4530656_1325 (ligA)
03420 Nucleotide excision repair
SAMEA4530656_1325 (ligA)
03430 Mismatch repair
SAMEA4530656_1325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccys03032
]
SAMEA4530656_1325 (ligA)
03400 DNA repair and recombination proteins [BR:
ccys03400
]
SAMEA4530656_1325 (ligA)
Enzymes [BR:
ccys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA4530656_1325 (ligA)
DNA replication proteins [BR:
ccys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4530656_1325 (ligA)
DNA repair and recombination proteins [BR:
ccys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA4530656_1325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4530656_1325 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAMEA4530656_1325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4530656_1325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
SNV77857
LinkDB
All DBs
Position
1:complement(1381533..1383566)
Genome browser
AA seq
677 aa
AA seq
DB search
MTEQFVELRRQWEDLAEEVRRHRELYYKGHPVISDAEFDQLYSQLEKLEEAHPELAVPDS
PTKQVGAPVSGPFADVEHLERMMSLDNVFSSEELAEWLERTPGPYLTELKIDGLSINLVY
RNGQLERAATRGDGTTGEDITANARVIKDIPHTLKGDFPPLVEVRGEVFIRPEDFPDLNA
QRIEEGGKPFANPRNTAAGGLRQKNPEDVKKRKLRMICHGIGAREGFEPVTQHEAYEALK
SWGLPVSEYTRQAKTAKDVQKAVDYWAEHRHDAIHEMDGVVVKVDSISQQRGLGSTSRAP
RWAIAYKYPPEEVTTKLLDIQVGVGRTGRITPFAVMEPVFVSGSTVSMATLHNREEVKRK
GVLIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFIFPTLCPSCGTRLAPQKEGDVDWRC
PNSRSCPAQLASRLEYIAGRGAFDIEALGEKGAEDLIRSGVLVDEGGLFSLTEEDLLKTT
QYTTKAGKLNATGKKLLDNLVTAREVDLWRVIVALSIRHVGPTAARALANRYQSMQALID
APVEDLAETDGVGAIIAEAFKEWFTVDWHRQIVDAWAEAGVTMEADTSDREEQTLAGVTV
VVTGTLENFTRDSAKEAILRRGGKAAGSVSKKTDYVVVGKNAGSKEDKARELGVPILDEA
GFQVLLESGPAELGAAQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaacaatttgtggaactacgccgtcaatgggaagacctcgccgaggaagtccgc
cgccaccgtgagctttattacaaggggcaccccgtcatctcggatgctgagtttgaccag
ctgtactcccaacttgagaaactggaggaagcgcacccagaactagcggtaccagactct
ccgacgaagcaagtcggcgcgcctgtttcaggcccatttgcagatgttgaacacctcgaa
cgcatgatgagcctggacaacgtgttcagcagtgaggagttggcagagtggctcgaacgt
actcctggcccgtatctgactgaacttaagattgatgggctgtcgatcaatctggtgtac
cgcaacggccagctggaacgggctgccacccgtggtgacggcaccacaggtgaagatatt
accgccaacgcacgagtgatcaaggacattccgcacacgctgaaaggagacttcccacct
ctggttgaggtgcgcggtgaggtgtttattcgcccagaagacttcccagacctcaacgcc
cagcgcatcgaagaaggcggcaaaccgtttgccaatccgcgaaacaccgcagcaggggga
ttgcgccagaaaaatccagaagatgtgaaaaaacgcaaactgcggatgatttgccacggc
atcggcgcccgcgaaggcttcgagccagtgacccagcatgaggcctatgaggcattgaaa
tcgtgggggcttcctgtcagcgaatacacccgccaggcaaagacagcaaaagacgttcaa
aaagcagttgattattgggcggagcaccgccacgacgcaatccacgagatggacggcgtg
gtagttaaggtcgattcgatctcgcagcagcgtgggctcggttcgacctcgcgcgccccg
cggtgggcgattgcctacaagtacccgcccgaggaagtcacaacaaagttgcttgacatc
caggtcggtgtgggccggaccgggcgtattacaccgtttgcggtgatggaaccggtgttc
gtgtcaggctccacggtgtcaatggccacgctgcacaaccgagaagaggtcaagcgcaag
ggtgtgctgatcggggacactgtagtagtgcgtaaagccggtgagatcatccccgaagtg
ctggggccagtggcagacctgcgcgatggaacagagcgtgaattcattttccccaccctg
tgcccgtcgtgtggcacccgtttagcaccgcaaaaggaaggcgacgtcgattggcgctgc
ccgaatagccgctcgtgccccgcgcagctggccagcaggcttgaatatatcgctgggcga
ggcgcattcgatattgaggcgcttggagagaagggtgctgaggatctgattcgctcgggc
gtgcttgtcgacgaaggaggcttgttctcactaaccgaggaggacctgctgaaaaccacg
cagtacaccacgaaagccggaaagctgaacgccacaggcaaaaaactgctggacaattta
gtcaccgcacgcgaggttgacttgtggcgcgtgattgtcgctttgagtatccgtcacgtc
gggcctaccgccgcgcgggctttagccaaccgctaccagtcaatgcaggcgcttatcgac
gcgcccgtggaggatcttgcggagactgacggggtgggagcgatcatcgcggaagccttt
aaagagtggttcaccgtggactggcatcgccagatcgtggatgcatgggctgaggccggc
gtgaccatggaggcagatacctctgaccgggaggagcaaaccttggcaggggtgactgtg
gttgtcactggcacgctggagaatttcacgcgtgactcagccaaggaagcgatccttaga
cgcggagggaaagcagctggctccgtatccaagaagacagattatgtcgtcgttggtaag
aacgccggttccaaagaggacaaggcccgcgaattgggcgttccgattctcgacgaggct
gggttccaggtgcttcttgaatcgggtccggctgaattaggtgccgcgcagtag
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integrated database retrieval system
