Chthonomonas calidirosea: CCALI_01064
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Entry
CCALI_01064 CDS
T02699
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccz
Chthonomonas calidirosea
Pathway
ccz03030
DNA replication
ccz03410
Base excision repair
ccz03420
Nucleotide excision repair
ccz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCALI_01064
03410 Base excision repair
CCALI_01064
03420 Nucleotide excision repair
CCALI_01064
03430 Mismatch repair
CCALI_01064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccz03032
]
CCALI_01064
03400 DNA repair and recombination proteins [BR:
ccz03400
]
CCALI_01064
Enzymes [BR:
ccz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCALI_01064
DNA replication proteins [BR:
ccz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCALI_01064
DNA repair and recombination proteins [BR:
ccz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCALI_01064
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCALI_01064
MMR (mismatch excision repair)
DNA ligase
CCALI_01064
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCALI_01064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
Zn_ribbon_NUD
Mustang
UPF0758_N
HTH_45
RUBY_RBDX
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CCW34886
UniProt:
S0EX65
LinkDB
All DBs
Position
1246877..1248997
Genome browser
AA seq
706 aa
AA seq
DB search
MSDPQSSQPTEAVRRRVQELREQIERANYRYYVLDDPEITDAEYDALLQELKDLEERYPE
LATPDSPTRRVGAEPAVTTFAPFPHRAPMLSLDNAFSYEELRAWEDRNRRFLGAPPDLRF
EYVCELKIDGLSISLIYENGEFVKGGTRGNGYVGEDVTLNLLTIPSLPKKLRPAPKKSEQ
KSISAAHTQPTLDFAADSQQAAFPTFIEIRGEVFLTHQEFQRINEELEERGERTFANCRN
AAAGSVRQKDPRVTASRRLDLLVYAVGHYEGWEFQSQYELLQTYREWGLPTNPNIRLCST
LEEAITFCEEWATRKEELPYDIDGVVIKVNSFALQRELGQVSRSPRWAIAYKYPAIQART
KVLAIEVQVGRTGALTPVAHLEPVPLAGVIVARATLHNEDEIRRKDVRIGDMVIIQRAGE
VIPEIVEVVTSERDGDEIVFQMPTHCPVCGTPVERPQGEAIARCPNPLCPARVQQTIEHF
VSRNAMNIEGLGEKHIAQLIQKGLIKDPADLYYLTKEQLLPLERMGEKLAEKILANIALS
RQRPLANLIYALGIRHVGEHVAAVLADHFGSLERLQKASVEELAQIYEIGPATAESIAAW
FADPQNQQMLEKLKRAGVQPLTQSTAPVSDALKGKTFVFTGALAHMTREEAEAAVRRLGG
RAASSVSRQTSYVVVGENPGSKLAKAQQLGIPILTEEEFLEMLEAT
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacccccagtcttctcaaccaaccgaagccgttcgtcgtcgcgtgcaagagctg
cgcgagcagatagagcgagcgaactatcgctactatgtgctcgacgaccccgagataacc
gatgcggaatatgatgcactgctgcaggaactgaaggatctggaggaacgttacccggaa
ctggcaacccccgattcccccacacgtcgtgttggcgccgagccggcagtaacaaccttt
gctccatttcctcaccgcgcccccatgctctctctcgataacgccttctcctatgaggag
ctacgcgcctgggaagatcgtaaccgtcgttttctcggcgccccgccagacctgcgcttc
gagtatgtttgtgagctgaaaatagatggactctccatctctttaatctacgaaaatgga
gagttcgttaagggcggcacccgtggcaacgggtatgtcggcgaagatgttacgctcaac
ttgcttaccatcccatcgctgcccaaaaagcttcgtccggcccccaaaaaatccgagcag
aaaagcatatccgcagcccacacgcagcctacgctagacttcgctgccgattcgcaacag
gccgccttccctaccttcatcgagatacgaggagaggtctttctaacgcatcaggagttc
cagcgcatcaacgaggagctggaagaacgaggagagcgaacctttgccaactgcaggaac
gcagccgccggatcggtgcgtcaaaaagaccctcgcgtcaccgcatcccgaagactcgac
ctcctggtctatgcggtggggcactacgagggctgggagtttcaaagccagtacgagctg
cttcagacctatcgggaatgggggctgccaacaaaccccaatattcgcctttgctccacc
ctagaggaggccattaccttttgcgaagagtgggccacccgtaaagaagagcttccctac
gatattgatggcgtggttattaaggttaactcgtttgccctccagcgcgagctaggccag
gtgagtcgctcgccacgatgggctatcgcctacaaatatccggcgattcaggcccgcaca
aaggttttggctatcgaagtacaggtaggcagaaccggtgcgttaaccccggtcgctcat
ctggaacccgttcccctagccggcgtcattgtggctcgtgccactctgcataacgaagac
gagattcgtcgcaaggacgtgcgcatcggcgatatggtcatcattcaacgggccggtgag
gtgattccagagatcgtggaggtcgttacgagcgaacgcgatggggatgagatcgtcttc
caaatgcccacccactgccccgtttgcggcactcccgtcgaacgtcctcaaggggaggcc
atcgctcgctgccccaaccccctttgccctgcacgcgtacaacaaaccatagagcacttc
gtttcccgcaacgccatgaacatcgaggggctcggagaaaagcacatcgcacagctcatt
cagaaagggctcattaaagaccctgcagacctctactatctcacaaaagagcagcttctt
cctctggaacgcatgggtgagaaactggccgaaaagattttggccaacatcgcccttagc
cgccaacgccccttagccaaccttatctacgccctaggcatacgccacgtgggcgaacat
gtggccgctgtgctggcagaccactttggctctcttgaacgccttcaaaaggcctcggtg
gaagagctagcccaaatctacgagatcgggcccgccacagcggaaagcatcgccgcctgg
tttgccgacccacaaaaccagcagatgctcgaaaagctgaagagagctggagtacaaccg
ttgacgcagtctaccgcccctgtctccgacgcgctgaaaggaaagacctttgtctttacg
ggcgccctcgcccacatgacccgcgaagaggcagaggccgccgtgcgtcgcttaggaggt
cgcgctgccagcagcgttagtcgccagacctcttatgtggtcgttggcgaaaaccctgga
agcaaacttgccaaagcacagcaactcggcattcctatccttacggaagaggagtttcta
gagatgctggaggcgacctag
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