Chryseobacterium daecheongense: MUU74_00455
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Entry
MUU74_00455 CDS
T08680
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdae
Chryseobacterium daecheongense
Pathway
cdae03030
DNA replication
cdae03410
Base excision repair
cdae03420
Nucleotide excision repair
cdae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUU74_00455 (ligA)
03410 Base excision repair
MUU74_00455 (ligA)
03420 Nucleotide excision repair
MUU74_00455 (ligA)
03430 Mismatch repair
MUU74_00455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdae03032
]
MUU74_00455 (ligA)
03400 DNA repair and recombination proteins [BR:
cdae03400
]
MUU74_00455 (ligA)
Enzymes [BR:
cdae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUU74_00455 (ligA)
DNA replication proteins [BR:
cdae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUU74_00455 (ligA)
DNA repair and recombination proteins [BR:
cdae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUU74_00455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUU74_00455 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUU74_00455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUU74_00455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
RNA_lig_T4_1
PTCB-BRCT
Dna2
RNA_ligase
DUF7575
Zn_ribbon_3
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
UOU98452
LinkDB
All DBs
Position
92235..94241
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEKLRKELHQHNENYYLLDTPTITDYEFDQLLEELQNLEAKYPEFYDENSPT
MRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIDDPVEFVAELKYDGASI
SILYEKGKLVQAVTRGDGFQGDEITGNVRTISDVPLTLKGDFPDHFFMRGEIYLTRKNFD
KINKQREEEGLDPFMNPRNTASGSLKIQDSAEVRKRGLSSVLYQFISDEVSAETHWELLE
KAKSWGFKTSQQAQLCKTLEEVKEFISYWDTERHNLPFEIDGIVLKVNSLKHQRQLGYTA
KSPRWAMAYKFKAEKVETELLNVSYQVGRTGAITPVANLRPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNIEKRNAESKEIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYREKLIENPADLYTLTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEDLKNATVE
ELCQVEDIGTKIAISIVEFFNNPENVLMIERLKSSGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTREQAEEMVEKHNGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEQQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaacattcaacagaaaatagaaaagcttcgtaaagagcttcatcagcataat
gagaattattatctactggacactcctaccatcacggattatgagtttgaccagctttta
gaagagcttcaaaacctggaagccaaatatcccgagttttacgacgaaaattcacctact
atgcgtgttggtggtggtattacaaaggttttcccgaccattcagcataaattcaggatg
tattctcttgataattcttatgattttgatgaccttgaagattgggaaaaaagaattatt
aaaacgattgatgatccggtagaattcgttgcagaattaaaatacgacggagcttctatt
tccattctgtatgaaaaaggcaaactggttcaggctgtcacccgtggagacggattccag
ggggatgagatcacagggaatgtacggacaatttcagatgttccactcactttaaaaggt
gattttccggatcatttctttatgcgtggtgaaatttatctgacgagaaagaatttcgac
aagatcaataaacaaagagaggaagaaggcttagatcctttcatgaatcccagaaataca
gcaagtgggagcctgaagatacaggatagtgcggaagtaagaaaacgtgggctgtcttca
gtcctttatcagtttatttcagatgaagtttctgcggaaacccattgggagctactggaa
aaggcaaaatcatggggtttcaagacttcacaacaggcccagctatgcaaaacattagaa
gaagtcaaagaattcatcagttattgggatacggaacgtcacaatttaccttttgaaatc
gatggaatcgttttaaaagtcaattccctgaaacatcaaaggcagcttggctacactgcc
aaatctccacgctgggcaatggcttataaattcaaagcggaaaaggtggaaactgaacta
ctaaacgtttcttaccaggtaggaagaacgggagctattactccggttgccaatcttaga
cctgttttattagcaggaaccattgtaaaaagagcctctcttcacaatgaagacatcatc
aagaagctggatcttcatgaacatgactttgtgtatgtggaaaaaggcggtgagatcatt
cccaaaatcgttggggtaaatatcgaaaaaagaaatgcggaaagcaaagagatcgaatat
atcaaacattgcccggaatgcggaacggaactggtgaaaattgaagatcaggccatccat
ttctgtcctaatgaactacattgtccaccgcaagtagtcggaagaatgattcattacgtt
tccagaaaagccttaaatattgaaaatctaggaagcgaaaccatcgaacagctttacagg
gaaaaactgatcgaaaaccctgcagatctttatacattaacgaaagaacagcttcttccc
ctggaaagaatggcggaaaaatctgctcaaaatatcatttcagggatcgaaaagtcaaaa
gaaatcccttttgaaaaagtattgtacggaatcggaatcaaacatgtgggagaaaccgtt
gccaaaaaactggtgaaaaatttcccaactattgaagacctgaaaaacgctactgttgaa
gaactttgccaggtggaagatatcggaactaagatcgccatcagcattgtagaattcttc
aataatccggaaaacgttctgatgattgaacgcctgaaatcgtccggggtacagcttgaa
aaaggcgaaagcaccaatgaagtcttatccaatgtactggaaggaaaaaccttccttttc
acaggaaaattatccttattcacaagggaacaggcagaagaaatggtggaaaagcataat
ggaaaaaatatttccgcagtatccaaaaacctgaattatcttgttgtaggtgaaaaagcc
ggaagtaagctaaaaaaagcccaggatattgggactattgagatcctggatgaacagcag
tttttggatttaatcgagcaacagtaa
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integrated database retrieval system
