Clostridioides difficile CD196: CD196_3124
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Entry
CD196_3124 CDS
T00997
Symbol
dnaL
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc03030
DNA replication
cdc03410
Base excision repair
cdc03420
Nucleotide excision repair
cdc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CD196_3124 (dnaL)
03410 Base excision repair
CD196_3124 (dnaL)
03420 Nucleotide excision repair
CD196_3124 (dnaL)
03430 Mismatch repair
CD196_3124 (dnaL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdc03032
]
CD196_3124 (dnaL)
03400 DNA repair and recombination proteins [BR:
cdc03400
]
CD196_3124 (dnaL)
Enzymes [BR:
cdc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CD196_3124 (dnaL)
DNA replication proteins [BR:
cdc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CD196_3124 (dnaL)
DNA repair and recombination proteins [BR:
cdc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CD196_3124 (dnaL)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CD196_3124 (dnaL)
MMR (mismatch excision repair)
DNA ligase
CD196_3124 (dnaL)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CD196_3124 (dnaL)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
RNA_ligase
DUF6642
LRR_LRWD1
RUBY_RBDX
DASH_Hsk3
Motif
Other DBs
NCBI-ProteinID:
CBA66332
LinkDB
All DBs
Position
complement(3702417..3704450)
Genome browser
AA seq
677 aa
AA seq
DB search
MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSP
TNRVGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGENVEYVVEFKIDGLS
VGLTYNNGEFEKGATRGDGVVGEDISQNLMTVKSIPLKINDKKELIVRGEVYISKDNFRK
VNEQQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHSESLE
YLEKLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEMGYTA
KSPRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNEDYI
REKDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPVCSEPTIRLEGEAAV
KCINMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLNEKIIQDVSDLYYIKKEDVVDL
ERMGEKSADNLINSIEKSKENDLWRLINGLGIKFIGVKAAKILAYNFKDLDEVISATSEQ
LEELEEFGSIMANSVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLT
GTLPTLKRNDAKDMIEKRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFL
ELLKLSSKDEVKAVLES
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaagtgagcgtaaaagatgaaattaataaacttatagagacaataaactaccat
aatgaaaggtattataatcaagatagcccagaaatatcagattatgaatacgataagtta
atgaaggagttaatttctttagaagaagaacatccagaactaaagagaattgattctcca
acaaatagggtaggaggtaagccattagataaattcaatcaaattgtacataaaactcct
atgttgagtttatcaaatgctttttcagagcaagatttgagagattttgataagagagtt
caagaatatgtgggagaaaatgttgaatatgttgttgaatttaaaatagatggtctttct
gtaggtctaacttataacaatggagagtttgaaaaaggagcaactagaggagatggagtt
gtaggagaagatatttctcaaaacttaatgacagtaaaaagcatacctcttaagataaat
gataaaaaagaactaatagttagaggagaagtatatatatcaaaagataattttagaaaa
gtaaatgaacaacaagaagaacaagaacagccattatttgctaatccaaggaatcttgca
gctggttcattgagacaattagacccaaaactaacagcaaagagaccattagatatattt
gtatttaatatggaaaatatagaagaatatgatttagaaagtcacagtgaatcactagag
tacttagaaaaactaggattttcagtaagtcagagttataaagtttgtaaaagtatagat
gaagttattgagcatattgaatactggacagataacaggggtaatttagactacgaaata
gatggtatggtaataaaagtaaacaatataaaacaaagagacgaaatgggatatacagcc
aaaagtcctagatgggcaattgcatataaattcccagcagaaaagaagaaaactaaaata
gtagatataatagtagaagttgggagaactggtacaataacaccttcagcaattcttgaa
ccagtcagacttgcaggtactactgtaagtagagctacacttcacaatgaagattatata
agagaaaaagatataaaaataaatgatacagtattagttcaaaaagcaggggacataata
cctcaagttttagaagttataaaagaggaacgtactggagatgaaatagattttaaaatg
ccagaaaagtgtccagtttgttcagagccaacaataagattagaaggagaggctgctgta
aaatgtatcaatatgtcttgcccagcccaaataagaaggggaattatacactttgtgtca
agggatgcaatgaatatagatggattgggagaatctataattacactgctattaaatgaa
aaaattattcaagatgtatctgatttatattatataaaaaaggaagatgtagtcgaccta
gagagaatgggcgaaaaatctgctgacaatttaataaattcaattgaaaaatcaaaagaa
aatgatttatggagacttataaatggattaggtattaaatttataggagttaaagcagct
aagatacttgcatataactttaaggatttagatgaagtaatttctgcaactagtgagcaa
ctagaagaattagaggaatttggaagtataatggcaaacagcgttgtcgagttttttaag
gaagacaaaaatatgaacgttataaacaagttaaaaaatgtaggagtaaatacaaaatca
ttggataatacaggtgaaaaagtagaaaaaatatttgaagggatgaaaatcgtattgact
ggtacacttcctacattaaaaagaaatgatgcgaaagatatgatagaaaaaagaggtgga
aaagctacatctagtgttagtaaatcgacaacatttgttttggcaggtgaagaagctggt
tctaaacttactaaagcaaatgatttaggaattaaagttatagatgaagagagattttta
gaattattaaagttatcatcgaaagatgaagtaaaagctgtattagagagttaa
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