Corynebacterium diphtheriae HC02: CDHC02_0986
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Entry
CDHC02_0986 CDS
T01694
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cde
Corynebacterium diphtheriae HC02
Pathway
cde03030
DNA replication
cde03410
Base excision repair
cde03420
Nucleotide excision repair
cde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDHC02_0986 (lig)
03410 Base excision repair
CDHC02_0986 (lig)
03420 Nucleotide excision repair
CDHC02_0986 (lig)
03430 Mismatch repair
CDHC02_0986 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cde03032
]
CDHC02_0986 (lig)
03400 DNA repair and recombination proteins [BR:
cde03400
]
CDHC02_0986 (lig)
Enzymes [BR:
cde01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CDHC02_0986 (lig)
DNA replication proteins [BR:
cde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDHC02_0986 (lig)
DNA repair and recombination proteins [BR:
cde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CDHC02_0986 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDHC02_0986 (lig)
MMR (mismatch excision repair)
DNA ligase
CDHC02_0986 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDHC02_0986 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
AEX76478
LinkDB
All DBs
Position
1028069..1030102
Genome browser
AA seq
677 aa
AA seq
DB search
MTDNFADLRRQWDDLAEQVRHHRDAYYNHTPEISDAEFDQLFRQLQQLEQEHPELAVPES
PTLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRTPSATYLTELKIDGLSIDL
VYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEIRGEVFIAVED
FALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEGFEADSQFE
AYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKIDSFAEQRALG
STARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGSTVEMATLHNQ
TEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGSEREFIFPTLCPACGTRLAPQKED
DADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGEKGAEDLIASGVLIDEAQLFNLTED
DLKRTKVYTTKAGALNATGEKLLANLESAKHTDLWRVLVALSIRHVGPTAARALAARYRS
LEALRAADVEDIANTEGVGAIIAQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQV
LEGLTIVVTGSLVDFSRDSAKEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGL
RILNEDEFKQLLANGTV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgactgataattttgctgatctacgccgccagtgggacgaccttgccgaacaagttcgt
caccatagagatgcctattacaaccacacccctgaaatctcagacgcggagtttgatcag
cttttccgccagctgcagcaattagaacaggaacatccagaattagctgtgccagagagc
cccactttgagagtcggcgctccagttgaacagagttctttcgacaatgttgagcacctt
gagcgcatgctcagtctggacaatgtttttgacgctgccgagcttgatgattggttgcag
cgaacccccagtgctacgtatcttactgagcttaaaatcgatggtctgtctatcgatttg
gtctatcgttctgggcgtcttgagcgggcggctactcgtggcgatggtcgggtaggagaa
gatgttactgctaacgccaaagttattgaggacatcccgcaccgtcttcagcattctgat
gcataccccgtgccagaacttgtcgaaattcgcggcgaggtattcattgccgtagaagat
ttcgctttagtcaatgaacaacgccaaaaagaaggcggaaagccgttcgcaaacccacgt
aatgctgctgctggctcgctgcgacaaaaagatactgaggctgttcgtaaacgccggttg
aagatgatttgtcatggaatcggtgcttcagaaggatttgaagcagatagtcagttcgag
gcatataaagccctagaagcatggggtctgccagtatcgccgtatacaaaacgtgtccac
tcggctcaagaagttcaggagcgcgtgacctactgggcacagcatcgccacgatgcgact
catgagatggacgggttagttatcaagatcgattcctttgcagaacagcgcgcgctagga
tccactgcccgcgcgcctcgctgggcaatcgcctacaaatatcctccagaagaagtgacc
accaagcttcttgatatccaggtcggcgttgggcgtaccggcagggtgacaccctttgcc
gttatggacccagtgttcgttgctggatccaccgtagagatggctacgttgcataaccag
accgaagtaaaacgaaaaggcgttcttatcggcgataccgtggttatccgcaaagccggc
gaagtgatcccagaggttctcggtcctgttgttgaaaaacgtgacggtagcgaacgcgaa
tttattttcccgacactatgcccagcatgtggaacacgcctagcgccacaaaaagaagac
gacgccgactggcgatgcccgaactcccaatcatgtccagcgcagttgtcctcacgtctt
acttatctagctggacgaggcgcatttgatatcgaagccctcggagaaaaaggagctgag
gatcttattgcctccggcgtgcttatcgacgaagcccagctgtttaacctgacggaagac
gatcttaaacgcaccaaggtgtacaccaccaaagccggtgcgcttaacgcaactggtgaa
aagttgctggccaaccttgagtctgcaaagcatacggatctgtggcgtgttctcgttgca
ctgtcaatccgacacgttggaccaaccgcagccagagctcttgcggcacgttatcgaagc
ctcgaagcattacgggctgctgatgtggaagacattgctaatactgagggcgttggtgcg
attatcgcacagagcttcgcgcagtggtttgacgtgccatggcacagaaatatcgtagaa
gtatgggctgatgctggtgtcacaatggcggattcggaggcagatatccctgaccaagtt
ctagaaggattgaccattgtagtgaccggttctttggtcgatttttctagggattccgct
aaagaggcaattgtttctcgtggtggtaaagcaagcggctcggtttccaagaagaccagt
tacgtggtagtgggtgagaacgcaggtagcaaggaaacgaaagcccgtgatctgggattg
cgcatcctcaacgaagacgagtttaaacagttgttagcaaacggcaccgtctag
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