KEGG   Cryptococcus decagattii: 89991594
Entry
89991594          CDS       T10966                                 
Symbol
IAS62_004823
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cdec  Cryptococcus decagattii
Pathway
cdec03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cdec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    89991594 (IAS62_004823)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cdec03400]
    89991594 (IAS62_004823)
Enzymes [BR:cdec01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     89991594 (IAS62_004823)
DNA repair and recombination proteins [BR:cdec03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     89991594 (IAS62_004823)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT RNA_ligase DNA_ligase_A_C LIG3_BRCT RTT107_BRCT_5 Neuralized
Other DBs
NCBI-GeneID: 89991594
NCBI-ProteinID: XP_064722708
LinkDB
Position
8:complement(join(305479..305495,305548..305624,305678..305815,305866..305960,306016..306066,306119..306229,306284..306674,306733..306835,306892..307020,307074..307158,307216..307249,307302..307368,307475..307600,307650..307693,307747..307771,307820..307908,307963..308022,308083..308204,308258..308363,308427..308625,308676..308711,308759..308844,308900..308978,309032..309236,309289..309425,309475..309560,309619..309755,309812..309943,310002..310277))
AA seq 1080 aa
MAVHAPYYHAPPPTQEINGEKPTLAAATTLERPADCINRGQYPAFYIICGYLNRLRADAP
HKKYELLMRIFGNWREKVGPDLYPLIRLLLPDKDRERPVYNLKESMLARCYIDILSLEKH
SEAAQRLIKWKQPAEGSSNPTGDFAKVCYNEIKARSTVEEGQLSVEAVNMLLDKLAVGKM
KQAEYVPILKAINMQCTAEEQEWIIRIILKDLHISIRERGVLSAFHPDAIDLYSICSDLK
RVCWTLYDPGFRLNKNETHLELFHSFVPQLCGRMNDASLENIAKAIGAPKEFIMEEKLDG
ERIQLHMRGNGAQWFYCSRKAKDYTYLYGAHPGEGSLTRYIANAFQDNVRNIILDGEMMV
WDPVVERYLAFGTLKSAALDHFNDETAPRPCFKVFDILFLNDHCLSRKRLSERKRLLRSG
KIFKNIEDYKGRLEFVDEKRGKSAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDW
IKVKPEYSDQMGENLEVLVLGGWWGKGGRSGKISRLLCGLREQAFDDGTVKQPTFKTFCS
IGSGMSYSDYEWILNKHKKHWKPFDRFNPPPFMKLGPVGLDDKPDVYIEPENSFVIEVKA
SEIVPAGGGYGIGFTLRFPRCKYIYYDRNSRDYELDDESKERDMWTCVKRADFMDLFSRP
KRSYDDSQGPGKKKKRKVVRSKKNHIITNFRGQKLSDIDAETSIFSDMTFYIAKGTSEYP
KADLEAVVHKHGADFTQAQLSDLSAIVISPDQKSPLVRAQIRQGVNVIKPEWIFESIARR
KALPLLKEFLVYASEEAQVGRYYNKTLEQYDKVSFVRDRTGETLFEEDGDADVEEEVMDD
EDKEEIDMEEVREANDRRMAREVLKERESNRSLEQKKVQEAWGLRSRASTGGSDSEAEEI
KSLKEESDTDSERIRRLRAIYQDEEDEENDSHESDVGVDGDDYRLAPLNGLNDKEEGFMG
ESPEAMHYDEDRIFYHLAFYIDTPENAAVNGLESSSPSLNAQERFAKIEKLLAENGGRAV
ESISDPKLTHIIMDDEDSGRYVELTRKTALPRRKHIVTPKWVEDCVDEETLLDEDLYKPK
NT seq 3243 nt   +upstreamnt  +downstreamnt
atggcagtccatgctccatattatcatgcacctccgcccacgcaggaaataaatggcgag
aagccaacattagccgcagcgacaaccctcgaacgtccagcggactgtatcaaccgcggc
cagtatcccgctttctacattatctgcggctatctgaacagactacgggcagatgctcca
cataaaaagtatgagcttctgatgaggatatttgggaactggagggagaaagtagggccg
gacctttatccgttgatcaggttattgttacctgataaagatagggaaaggcccgtgtat
aatttgaaagagtcaatgttggctcgatgctacattgatatattgtcgttggagaagcat
agcgaggcggctcagaggctgatcaaatggaagcaacctgcagaaggttcctcaaatcca
accggagattttgccaaagtctgttacaatgagataaaagctcgatccaccgtggaggaa
ggtcagctgagtgttgaggcggtaaatatgcttctcgataagcttgccgttgggaaaatg
aagcaagcagaatatgtgcctatactcaaggctatcaatatgcaatgcacagctgaggaa
caggaatggattatccggatcattctcaaagacttgcacatttcaatacgtgaacgggga
gttttatcagcattccatcctgatgcgatagatctgtatagcatctgttcagaccttaaa
cgtgtctgttggactttatatgatcccggcttcaggctcaataaaaatgagacacatctt
gaattattccactcttttgtcccccaattatgtggccgcatgaatgatgcgtcacttgaa
aatattgcaaaggcgattggagctccaaaagaattcatcatggaagaaaagttggacggg
gagaggatacaattacacatgagaggcaatggtgcacaatggttctattgttcaaggaaa
gccaaagactatacatatctgtatggtgcccatccaggagagggaagtttgactcgctat
atagctaatgccttccaggacaatgtcagaaatatcattcttgatggggaaatgatggtt
tgggatcctgtagtggaacgttacctggctttcggaaccctcaagtcggctgcacttgac
catttcaatgatgaaaccgccccgcgtccatgttttaaagtatttgacatacttttcttg
aacgatcattgcctttcccgcaaacgtttatcagaacgcaagcgccttcttcgttctgga
aaaatttttaagaatattgaggattacaaggggagattggaattcgtagacgaaaaaaga
gggaagagcgcaaaggacattagggagtatttggagagagtggtcgaaaccaagggcgaa
ggtctagtggttaagaagacggatgtaatctatcaaacaaactcgagaggatatgactgg
atcaaggtcaaacctgagtatagtgaccaaatgggtgagaatctcgaagtcttagtgttg
ggcggatggtggggtaaaggaggacgttcagggaagatttcgagattactctgcggatta
agagagcaggcgtttgacgatggcacagtaaagcaaccgaccttcaagactttttgttcg
atcggttctggaatgagctattcagactacgagtggattttgaataaacacaagaagcac
tggaagccctttgataggttcaatccacccccatttatgaaacttgggccagtgggttta
gacgacaagccggatgtttatatcgaaccggagaactcttttgtcatcgaagttaaagcg
tctgaaattgtgccggcaggcggaggctacggaataggatttactcttcgttttccgcgc
tgcaaatacatctactacgacaggaatagtcgagattatgagctggacgatgagtcaaag
gagagggatatgtggacctgtgtaaaacgggcagatttcatggacctcttctcaaggccc
aaaagatcatatgatgatagtcaaggtcctgggaaaaagaagaagcgtaaggtggtcagg
tctaaaaaaaaccacatcatcaccaatttccgaggtcagaagctttcagatatagatgcg
gagacgagcatattcagcgatatgacgttttatattgcaaaaggcacatctgaatacccg
aaagctgatctcgaagcagttgtgcataagcacggtgcagatttcacacaagctcagcta
tccgacttatcagcaatcgtcatctctcccgatcaaaagagccctctagtacgagcccag
atccggcagggggtcaacgtcatcaagccagaatggatatttgagagtattgcacggagg
aaagctttgcctttgttgaaggagttcctggtctacgcgtcggaagaagctcaagtggga
cgatactacaataagacactagagcagtatgacaaggtttcttttgtacgtgatcgtacc
ggcgagacactcttcgaagaagatggtgatgccgatgtcgaagaagaggttatggatgat
gaggacaaagaagagattgacatggaagaagttcgagaagccaatgacagaaggatggcc
agagaagttctcaaagagagagaatcgaatagatcactggaacagaagaaggttcaggaa
gcatggggcctgagatcaagagcgagtacgggaggttccgatagtgaagctgaggaaatt
aaatcgttgaaagaggagagtgacacagattcggaaaggattagaagactccgggccatt
tatcaggacgaagaggacgaagaaaacgacagtcatgaatcagatgttggtgtagatggg
gatgattacagactggcccccctcaacggattaaatgacaaggaggagggatttatgggg
gagagtccagaggcaatgcactatgatgaagatcgaattttctatcatctcgcattttac
atcgatactcccgagaacgctgcggtcaacggcttggaaagctcttctccttctctcaac
gcccaagaaagattcgccaagatagaaaagttgttggcagagaacggtggacgtgcggtg
gaaagcatctccgatcccaagctcacgcacattataatggatgatgaggattcaggaaga
tacgtcgagttgacaaggaagactgccctgcccagaaggaaacacatcgtgactcccaaa
tgggtggaggattgcgtagatgaagagacattgctggacgaagatttatataaaccgaag
tag

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