KEGG   Colletotrichum destructivum: 87936661
Entry
87936661          CDS       T10409                                 
Symbol
CDEST_00158
Name
(RefSeq) Putative U6 snRNA-associated Sm-like protein Lsm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
cdet  Colletotrichum destructivum
Pathway
cdet03018  RNA degradation
cdet03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cdet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87936661 (CDEST_00158)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    87936661 (CDEST_00158)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdet03019]
    87936661 (CDEST_00158)
   03041 Spliceosome [BR:cdet03041]
    87936661 (CDEST_00158)
Messenger RNA biogenesis [BR:cdet03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     87936661 (CDEST_00158)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     87936661 (CDEST_00158)
Spliceosome [BR:cdet03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    87936661 (CDEST_00158)
 Complex C
  U2 snRNP components
    87936661 (CDEST_00158)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 87936661
NCBI-ProteinID: XP_062772368
LinkDB
Position
1:join(518275..518397,518457..518546,518626..518662,518715..518755)
AA seq 96 aa
MADVGEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYV
VDEDEEDEDVKTISRKSEMLFVRGDSVVLISPHTSS
NT seq 291 nt   +upstreamnt  +downstreamnt
atggcagacgtcggcgaagacacgactcacgttcaggaacccctcgacctcgtcaagctc
ctactcgatgaggtggtttttgtcaagctcagaggcgaccgggaactcaagggcaggctc
catgcatacgacagtcattgcaacctggttctaggagaggtggaggagacgatttacgtc
gtggatgaggatgaagaggacgaagacgtaaagactatcagcagaaagtcggagatgttg
tttgttcgaggcgacagcgtggtgctcatctcccctcacacatcgtcatag

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