Colletotrichum destructivum: 87946119
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Entry
87946119 CDS
T10409
Symbol
CDEST_09616
Name
(RefSeq) Putative LSM domain superfamily protein
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
cdet Colletotrichum destructivum
Pathway
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87946119 (CDEST_09616)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87946119 (CDEST_09616)
03041 Spliceosome [BR:
cdet03041
]
87946119 (CDEST_09616)
03032 DNA replication proteins [BR:
cdet03032
]
87946119 (CDEST_09616)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
87946119 (CDEST_09616)
Spliceosome [BR:
cdet03041
]
Complex A
U1 snRNP components
Sm proteins
87946119 (CDEST_09616)
U2 snRNP components
87946119 (CDEST_09616)
Complex B
U1 snRNP components
87946119 (CDEST_09616)
U4/U6.U5 tri-snRNP components
87946119 (CDEST_09616)
Complex C
U2 snRNP components
87946119 (CDEST_09616)
DNA replication proteins [BR:
cdet03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
87946119 (CDEST_09616)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
87946119
NCBI-ProteinID:
XP_062781826
UniProt:
A0AAX4IN11
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All DBs
Position
6:join(1424111..1424170,1424232..1424543,1424602..1424683,1424735..1424868)
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AA seq
195 aa
AA seq
DB search
MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKIRQNKPAAPGASAPSGQTIEKEEK
RTLGLTIVRGAHIVSLSVESEPPADPSARLGKSAPGGISSTLTAGPGVARPAGRGAAPAP
PSLAGPAAGVGGGAPPGFPGFPGAPPFGGRGAPPPGFPGAFPPPGFPQNAPFPPPGFNPG
GPPGGAPGFNPPPRR
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgagagtcacgttgaacgacggccgccagatgacgggacagatgcttgctttcgacaag
cacatgaaccttgtcctcgccgacaccgaagagtttagacgcgtcaagatccgccagaac
aagcccgccgctcctggagccagcgcaccctcgggtcaaacgattgagaaggaggagaag
cgaaccctcggtttgacgattgtccgtggcgcccacattgtttcgctgtcagtcgagtca
gagcctcccgcggatcccagtgcgagactcggaaagagtgctccgggtgggatctcctcg
accctcaccgccggccctggtgttgcgcgacccgccggtcgcggtgctgctccggctccc
ccatctctggctggccccgctgccggtgttggaggtggtgctcctcccgggttccctggt
ttccccggtgcaccgccctttggcggacgtggagctcctccccctggctttcctggtgcg
ttcccgcccccgggatttccgcagaacgccccctttcctcctccgggcttcaaccccggc
ggcccccccggtggagcccctggcttcaaccctcccccccgaagatag
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