Campylobacter devanensis: CIGN_0762
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Entry
CIGN_0762 CDS
T10324
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdev Campylobacter devanensis
Pathway
cdev03030
DNA replication
cdev03410
Base excision repair
cdev03420
Nucleotide excision repair
cdev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CIGN_0762 (ligA)
03410 Base excision repair
CIGN_0762 (ligA)
03420 Nucleotide excision repair
CIGN_0762 (ligA)
03430 Mismatch repair
CIGN_0762 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdev03032
]
CIGN_0762 (ligA)
03400 DNA repair and recombination proteins [BR:
cdev03400
]
CIGN_0762 (ligA)
Enzymes [BR:
cdev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CIGN_0762 (ligA)
DNA replication proteins [BR:
cdev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CIGN_0762 (ligA)
DNA repair and recombination proteins [BR:
cdev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CIGN_0762 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIGN_0762 (ligA)
MMR (mismatch excision repair)
DNA ligase
CIGN_0762 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CIGN_0762 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
ARQ99051
UniProt:
A0A1X9SS40
LinkDB
All DBs
Position
762594..764540
Genome browser
AA seq
648 aa
AA seq
DB search
MNHKEYLEAVNKLNDWARAYYTDDTPMASDDEYDALYHKVAEFESQNPNLKVIFSPTNRV
GGEILEQFEKLAHKARMWSMEDIFSDDELLAWIERGDKRSQRFFVEPKFDGASLNLTYEN
GVLISAATRGDGSIGEDVTSNARVISSVPLQIPYSGLIEIRGEVVITKSDFEKINANRAK
DGQNLLANPRNAAAGSLRQLDSSITKSRRLKFYPWGVGANELKFSTHSDMMDFVRSLGFL
RDDFVRVCNSIDEIRQAYDELLSLRDEKPIMMDGMVVRVNSLSKCDELGFTVKFPKFMVA
YKFPAIQKSAKLIDVALQVGRTGVVTPVGVLDGVEIDGAFVRNVTLHNFDEIERLGLMKG
DMVCVIRSGDVIPKITDVYKARRDGQEVAISRPCKCPECGSELLDEGAFIKCQNLNCKAR
VVSSIIYFASKKCMNIDGLGDAIIELLYKNGKISSIIDIYRLDSSSFDGLEGFKSKKIEN
TLNAIKASQRPPLHRFITSLGIEHIGEVAAKKIATVYPNKWLDLSMDELLNLDGFGEAMA
LSYLEFMRVNHIKVVELLEYITPIIDEINTTQNIFSGKTVVITGTLSRPRDEIKAELESF
GAKVSGSVSSKSDFVLSGESSGSKYQKALSLGIKIIDEIEYERLKNES
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatcataaagagtatttagaagcagtaaataagctaaatgattgggctagagcctac
tacacagatgatacacctatggcaagtgatgatgagtatgatgctttatatcataaggta
gctgagtttgagagccaaaatccaaatttaaaagtgatattttcgcctactaatagagtt
ggtggcgagattttagagcagtttgagaagctagcccacaaagctagaatgtggtcgatg
gaagatatttttagcgatgatgagcttttggcgtggatagagcgaggggataaacgctca
caaagattttttgtagagcctaaatttgatggtgcaagcttgaatttaacctatgaaaat
ggagtcttaataagtgcagctacaaggggtgatggatccattggtgaagatgttactagc
aatgctagggttattagttctgttcctttacagattccatatagcggtcttattgaaatt
agaggtgaagtggttataactaaaagtgattttgaaaagattaatgctaatcgtgctaaa
gatggtcaaaatttactagctaatcctagaaatgcagccgctggtagcctaagacagcta
gattctagcataaccaaatctagaagattgaaattttatccatggggcgtgggtgcaaat
gagcttaaatttagcactcatagtgatatgatggattttgttagatctttaggattttta
agggatgattttgttagggtttgtaatagtatagatgagattagacaagcttatgatgag
cttttatctttaagagatgaaaagcctataatgatggatggtatggtagttcgtgttaat
agcttgtcaaaatgcgatgaattaggatttacagtaaaatttcctaaatttatggtagct
tataaatttccagctattcaaaaatcagctaagcttatagatgtagccttgcaagttggc
agaacaggtgtagttacgcctgttggagttcttgatggggttgagattgatggggctttt
gttagaaatgttacattacataacttcgatgagattgagcgtctaggtcttatgaagggc
gatatggtttgcgtgattagaagtggcgatgtaatacctaagattactgatgtatataag
gctagaagagatggccaagaagtagcgataagtcgtccatgcaaatgccctgagtgtgga
agtgagcttttagatgaaggggcgtttattaagtgtcaaaatctaaattgcaaggctaga
gttgtaagctctattatatattttgcttctaagaagtgtatgaatatagatggtcttggt
gatgcaattatagagcttctttataaaaatggtaaaatctcaagtataattgatatatat
agattagatagttctagttttgatggattagagggttttaagagtaaaaaaattgaaaat
actctaaatgctataaaagcaagtcaaagaccaccacttcatagatttataacttcgctt
gggattgaacatattggtgaagtagcagctaaaaagatagctacagtttatcctaacaaa
tggctagaccttagtatggatgagcttttaaatttagatggttttggcgaagcgatggcg
cttagctatttggagtttatgcgtgttaatcatatcaaagtagtagagttattagagtat
ataactccaattatagatgaaataaacactactcaaaatatatttagcggtaaaacggta
gtaataactggcactctttctcgccctagagatgagattaaggctgaattagagagcttt
ggagcaaaggttagcgggtcagtatcatctaaaagtgattttgtattaagtggagagtca
agcggaagtaaatatcaaaaggctctatctttaggtattaaaataatagatgagatagag
tatgaaagattaaaaaatgagagctga
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