Clostridioides difficile 630: CD630_33090
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Entry
CD630_33090 CDS
T00487
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdf
Clostridioides difficile 630
Pathway
cdf03030
DNA replication
cdf03410
Base excision repair
cdf03420
Nucleotide excision repair
cdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CD630_33090 (ligA)
03410 Base excision repair
CD630_33090 (ligA)
03420 Nucleotide excision repair
CD630_33090 (ligA)
03430 Mismatch repair
CD630_33090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdf03032
]
CD630_33090 (ligA)
03400 DNA repair and recombination proteins [BR:
cdf03400
]
CD630_33090 (ligA)
Enzymes [BR:
cdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CD630_33090 (ligA)
DNA replication proteins [BR:
cdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CD630_33090 (ligA)
DNA repair and recombination proteins [BR:
cdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CD630_33090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CD630_33090 (ligA)
MMR (mismatch excision repair)
DNA ligase
CD630_33090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CD630_33090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_ligase
DUF6642
LRR_LRWD1
RUBY_RBDX
DASH_Hsk3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CAJ70206
UniProt:
Q180F3
LinkDB
All DBs
Position
complement(3873274..3875298)
Genome browser
AA seq
674 aa
AA seq
DB search
MSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNR
VGGKPLDKFNQIVHKTPMLSLSNAFSEQDLRDFDKRVQEYVGENVEYVVEFKIDGLSVGL
TYNNGEFEKGATRGDGVVGEDISQNLMTVKSIPLKINDKKELIVRGEVYISKDNFRKVNE
QQEEQEQPLFANPRNLAAGSLRQLDPKLTAKRPLDIFVFNMENIEEYDLESHSESLEYLE
KLGFSVSQSYKVCKSIDEVIEHIEYWTDNRGNLDYEIDGMVIKVNNIKQRDEMGYTAKSP
RWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNEDYIREK
DIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDFKMPEKCPVCSEPTIRLEGEAAVKCI
NMSCPAQIRRGIIHFVSRDAMNIDGLGESIITLLLNEKIIQDVSDLYYIKKEDVVDLERM
GEKSADNLINSIEKSKENDLWRLINGLGIKFIGVKAAKILAYNFKDLDEVISATSEQLEE
LEEFGSIMANSVVEFFKEDKNMNVINKLKNVGVNTKSLDNTGEKVEKIFEGMKIVLTGTL
PTLKRNDAKEMIEKRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEERFLELL
KLSSKDEVKAVLES
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtaaaagatgaaattaataaacttatagagacaataaactaccataatgaaagg
tattataatcaagatagcccagaaatatcagattatgaatacgataagttaatgaaggag
ttaatttctttagaagaagaacatccagaactaaagagaattgattctccaacaaatagg
gtaggaggtaagccattagataagttcaatcaaattgtacataaaactcctatgttgagt
ttatcaaatgctttttcagagcaagatttgagagattttgataagagagttcaagaatat
gtgggagaaaatgttgaatatgttgttgaatttaaaatagatggtctttctgtaggtcta
acttataacaatggagagtttgaaaaaggagcaactagaggagatggagttgtaggagaa
gatatttctcaaaacttaatgacagtaaaaagcatacctcttaagataaatgataaaaaa
gaactaatagttagaggagaagtatatatatcaaaagataattttagaaaagtaaatgaa
caacaagaagaacaagaacagccattatttgctaatccaaggaatcttgcagctggttca
ttgagacaattagacccaaaactaacagcaaagagaccattagatatatttgtatttaat
atggaaaatatagaagaatacgatttagaaagtcacagtgaatcactagagtacttagaa
aaactaggattttcagtaagtcagagttataaagtttgtaaaagtatagatgaagttatt
gagcatattgaatactggacagataacaggggtaatttagactacgaaatagatggtatg
gtaataaaagtaaacaatataaaacaaagagacgaaatgggatatacagccaaaagtcct
agatgggcaattgcatataaattcccagcagaaaagaagaaaactaaaatagtagatata
atagtagaagttgggagaactggtacaataacaccttcagcaattcttgaaccagtcaga
cttgcaggtactactgtaagtagagctacacttcacaatgaagattatataagagaaaaa
gatataaaaataaatgatacagtattagttcaaaaagcaggggacataatacctcaagtt
ttagaagttataaaagaagaacgtactggagatgaaatagattttaaaatgccagaaaag
tgtccagtttgttcagagccaacaataagattagaaggagaggctgctgtaaaatgtatc
aatatgtcttgcccagcccaaataagaaggggaattatacactttgtgtcaagggatgca
atgaatatagatggattgggagaatctataattacactgctattaaatgaaaaaattatt
caagatgtatctgatttatattatataaaaaaggaagatgtagtcgacctagagagaatg
ggcgaaaaatctgctgacaatttaataaattcaattgaaaaatcaaaagaaaatgattta
tggagacttataaatggattaggtattaaatttataggagttaaagcagctaagatactt
gcatataactttaaggatttagatgaagtaatttctgcaactagtgagcaactagaagaa
ttagaggaatttggaagtataatggcaaacagcgttgtcgagttttttaaggaagacaaa
aatatgaacgttataaacaagttaaaaaatgtaggagtaaatacaaaatcattggataat
acaggtgaaaaagtagaaaaaatatttgaagggatgaaaatcgtattgactggtacactt
cctacattaaaaagaaatgatgcaaaagaaatgatagaaaaaagaggtggaaaagctaca
tctagtgttagtaaatcgacaacatttgttttggcaggtgaagaagctggttctaaactt
actaaagcaaatgatttaggaattaaagttatagatgaagagagatttttagaattatta
aagttatcatcgaaagatgaagtaaaagctgtattagagagttaa
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