Corynebacterium diphtheriae NCTC 13129: DIP1077
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Entry
DIP1077 CDS
T00151
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdi
Corynebacterium diphtheriae NCTC 13129
Pathway
cdi03030
DNA replication
cdi03410
Base excision repair
cdi03420
Nucleotide excision repair
cdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DIP1077 (ligA)
03410 Base excision repair
DIP1077 (ligA)
03420 Nucleotide excision repair
DIP1077 (ligA)
03430 Mismatch repair
DIP1077 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdi03032
]
DIP1077 (ligA)
03400 DNA repair and recombination proteins [BR:
cdi03400
]
DIP1077 (ligA)
Enzymes [BR:
cdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DIP1077 (ligA)
DNA replication proteins [BR:
cdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DIP1077 (ligA)
DNA repair and recombination proteins [BR:
cdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DIP1077 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DIP1077 (ligA)
MMR (mismatch excision repair)
DNA ligase
DIP1077 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DIP1077 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAE49600
UniProt:
Q6NHQ4
LinkDB
All DBs
Position
1058711..1060744
Genome browser
AA seq
677 aa
AA seq
DB search
MTDNFADLRRQWDDLAEQVRHHRDAYYNHTPEISDAEFDQLFRQLQQLEQEHPELAVPES
PTLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRTPSATYLTELKIDGLSIDL
VYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEIRGEVFIAVED
FALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEGFEADTQFD
AYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKIDSFAEQRALG
STARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGSTVEMATLHNQ
TEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGSEREFIFPTLCPACGTRLAPQKED
DADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGEKGAEDLIASGVLIDEAQLFNLTED
DLKRTKVYTTKAGALNATGEKLLANLESAKHTDLWRVLVALSIRHVGPTAARALAVRYRS
LEALRAADVEDIANTEGVGAIIAQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQV
LEGLTIVVTGSLVDFSRDSAKEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGL
RILNEDEFKQLLANGTV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgactgataattttgctgatctacgccgccagtgggacgaccttgccgaacaagttcgt
caccatagagatgcctattacaaccacacccctgaaatctcagacgcggagtttgatcag
cttttccgccagctgcagcaattagaacaggaacatccagaattagctgtgccagagagc
cccactttgagagtcggtgctccagttgaacagagttctttcgacaatgttgagcacctt
gagcgcatgctcagtctggacaatgtttttgacgctgccgagcttgatgattggttgcag
cgaacccccagtgctacgtatcttactgagcttaaaatcgatggtctgtctatcgatttg
gtctatcgttctgggcggcttgagcgtgcggctactcgtggcgatggtcgggtaggagaa
gatgttactgctaacgctaaagttattgaggacatcccgcatcgtcttcagcattctgat
gcatacccagtgccagaacttgtagaaatccgtggcgaggtattcattgccgtagaagat
ttcgctttagtcaatgaacaacgccaaaaagaaggcggaaagccgttcgcaaacccacgt
aacgccgctgctggatcgctgcgacaaaaagatactgaggccgttcgcaagcgtcgtctg
aagatgatttgtcatggaatcggtgcttcagaaggatttgaagcagatacccagttcgat
gcatataaagccctagaagcatggggtctgccagtatcgccgtatacaaaacgtgtccac
tcggctcaagaagttcaggagcgcgtgacctactgggcacagcatcgccacgatgcgact
catgagatggacgggttagttatcaagatcgattcctttgcagaacagcgcgcgttagga
tctactgcccgcgcgcctcgctgggcaatcgcctacaagtatcctccagaagaagtgacc
accaagcttcttgatattcaggtcggcgttgggcgtaccggcagggtgacaccctttgcc
gttatggaccctgtgttcgttgctggatccaccgtagagatggctacgttgcataaccag
accgaagtaaaacgaaaaggcgttcttatcggcgataccgtggttatccgcaaagccggc
gaagtgatcccagaggttctcggtcctgttgttgaaaaacgtgacggtagcgaacgcgaa
tttattttcccgacactatgcccagcatgtggaacacgcctagcgccacaaaaagaagac
gacgccgactggcgatgcccgaactcccaatcatgtccagcgcagttgtcctcacgtctt
acttatctagctggacgaggcgcatttgatatcgaagccctcggagaaaaaggagctgag
gatcttattgcctccggcgtgcttatcgacgaagcccagctgtttaacctgacggaagac
gatcttaaacgcaccaaggtgtacaccaccaaagccggtgcgcttaacgcaactggtgaa
aagttgctggccaaccttgagtctgcaaagcatacggatctgtggcgtgttctcgttgca
ctgtcaatccgacacgttggaccaaccgcagccagagctcttgcggtacgttatcgaagc
ctcgaagcattacgggctgctgatgtggaggacattgctaatactgagggcgttggtgcg
attatcgcacagagcttcgcgcagtggtttgacgtgccatggcacagaaatatcgtagaa
gtatgggctgatgctggtgtcacaatggcggattcggaggcagatatccctgaccaagtt
ctagaaggattgaccattgtagtgaccggttctttggtcgatttttctagggattccgct
aaagaggcaattgtttctcgtggtggtaaagcaagcggctcggtttccaagaagaccagt
tacgtggtagtgggtgagaacgcaggtagcaaggaaacgaaagcccgtgatctgggattg
cgtatcctcaacgaagacgagtttaaacagttgttagcaaacggcaccgtctag
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