Caldicellulosiruptor diazotrophicus: CaldiYA01_09150
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Entry
CaldiYA01_09150 CDS
T08057
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdia
Caldicellulosiruptor diazotrophicus
Pathway
cdia03030
DNA replication
cdia03410
Base excision repair
cdia03420
Nucleotide excision repair
cdia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CaldiYA01_09150 (ligA)
03410 Base excision repair
CaldiYA01_09150 (ligA)
03420 Nucleotide excision repair
CaldiYA01_09150 (ligA)
03430 Mismatch repair
CaldiYA01_09150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdia03032
]
CaldiYA01_09150 (ligA)
03400 DNA repair and recombination proteins [BR:
cdia03400
]
CaldiYA01_09150 (ligA)
Enzymes [BR:
cdia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CaldiYA01_09150 (ligA)
DNA replication proteins [BR:
cdia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CaldiYA01_09150 (ligA)
DNA repair and recombination proteins [BR:
cdia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CaldiYA01_09150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CaldiYA01_09150 (ligA)
MMR (mismatch excision repair)
DNA ligase
CaldiYA01_09150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CaldiYA01_09150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
RUBY_RBDX
HHH
PASTA
BRCT_2
GFRP
RNA_ligase
Zn_ribbon_PADR1
SAM_EPH
HHH_8
Mustang
Motif
Other DBs
NCBI-ProteinID:
BCS80955
LinkDB
All DBs
Position
959132..961153
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPT
QRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFDYVVEYKIDGLS
VALEYENGLFVRGSTRGDGNVGEDVTENLKTIRSIPLKLKEDISIVVRGEVFMPKDEFIK
LNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELETHAEALEF
LKHLGFKVSPDYVICRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAGETAK
SPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIR
QKEIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFEKGLIKTPADIYYLKFEDLVNLE
RFGVKSTNNLLKAIQASKNRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEEQL
LSLPDFGEKMAKSVVTFFRQDQTRHLIERLKAAGVNTVSEKKAKSDILKGYTFVLTGALS
KYSRNEAKEILENLGAKVTESVSKKTTAVVVGQDPGSKLTKAQQLGVKILNEGDFEKLVK
ASSREEVEKILME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtttataaaaaagagaataagagaacttgttgatcttatcaattatcatgat
tataaatactatgttgaagataatccagagatcagcgactatgaatatgatatgttatat
cgtgagcttgttgagcttgaaaaacagtaccctgaatatgtatttccagattctcctaca
caaagggttggtgggaaggtaaaagaaggttttaaagaggttgtacatcgtgtaccgctt
ctttcgctttctaatgtgttcaatgaaggggaactttacgattttgacagaagactaaag
gaacttcttggtacatctaattttgactatgttgttgaatacaagattgacgggctttct
gttgcgcttgagtatgaaaatgggctttttgtcagaggttcaacccgtggagatggcaat
gtaggtgaggatgtcacagaaaacttaaagacaataaggtctattccgctaaagttaaaa
gaagatatctccattgttgttcgtggagaggtgttcatgcccaaggatgagtttataaag
ctcaaccaggaaagggaagagaatgaagagcctctttttgcaaatccacgaaatgcagcg
gcagggtcgcttcgtcagcttgacccaagaataacagcccaaagaaagcttgatatattt
gtgttcaatgtccagtggtgtgaaaaagagcttgaaacacatgcagaggcgcttgagttt
ttaaagcatctgggttttaaagtttcacctgactacgttatttgcagggatattaaagaa
gcatttgaagctataaagaagattgaagaaaaaagggacttgcttccttttgagatagac
ggtgctgttgtgaaactgaatcagctaagactgagagatgttgcgggggagactgcaaag
tcgcccagatgggctgttgcctacaaatttccgcccgagaaaaaggagacaaagcttttg
gatattgaagtcaatgtggggcgcacaggtattctaacaccaacggcaattttggagcct
gtaagaatttcaggttctgttgtttcaagggcaactcttcataacatggattatataagg
caaaaagaaataagaattggcgacacagtaatagtgcaaaaagctgcagagattattcct
gaggttgttgaggttgtgttttcaaaacgaacaggtcaagaaagaatttttgagatgcca
aagaaatgtcctgtttgcggagcagatgttataaaatttgaggatgaggttgcttacagg
tgcacaggtgttgaatgccctgctaaaagctacaggttaattttgcactttgtttcgcgc
gatgcaatggacatcgccggcatgggcgaaatggttgtaaaaaccttatttgaaaaaggt
cttataaagactcctgctgatatttactatttaaaatttgaagatttagttaacttggag
cgttttggagtaaagtcaacaaataatttgttgaaagctatacaggcatctaaaaacaga
ccattagacaggctaatatatgcgcttgggataaggcatattggtcaaaaagctgcaaaa
actcttgctgagcatatatcgtctatagatgacctttttactataacagaagagcagctt
ttaagtcttcctgactttggtgaaaagatggcaaaaagcgttgtgacatttttcaggcag
gatcagacaagacacctaatagaaaggctaaaagcagctggtgtaaatacagtttctgaa
aagaaagcaaaatcagatattttaaaaggctacacatttgttttgacaggggctttgtca
aagtatagcagaaatgaggcaaaagagattttagaaaatcttggtgcaaaagtgacagaa
agtgtttctaaaaagacaacagctgtggttgtaggtcaggaccctggcagcaaacttaca
aaagctcagcagcttggtgttaagattttgaacgaaggagattttgagaagttagtaaag
gcttcctcgcgtgaagaagtagaaaagattttaatggagtga
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