Celerinatantimonas diazotrophica: CEDIAZO_02663
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Entry
CEDIAZO_02663 CDS
T07531
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdiz
Celerinatantimonas diazotrophica
Pathway
cdiz03030
DNA replication
cdiz03410
Base excision repair
cdiz03420
Nucleotide excision repair
cdiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CEDIAZO_02663 (ligA_2)
03410 Base excision repair
CEDIAZO_02663 (ligA_2)
03420 Nucleotide excision repair
CEDIAZO_02663 (ligA_2)
03430 Mismatch repair
CEDIAZO_02663 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdiz03032
]
CEDIAZO_02663 (ligA_2)
03400 DNA repair and recombination proteins [BR:
cdiz03400
]
CEDIAZO_02663 (ligA_2)
Enzymes [BR:
cdiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CEDIAZO_02663 (ligA_2)
DNA replication proteins [BR:
cdiz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CEDIAZO_02663 (ligA_2)
DNA repair and recombination proteins [BR:
cdiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CEDIAZO_02663 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEDIAZO_02663 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
CEDIAZO_02663 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CEDIAZO_02663 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
SpoOE-like
DEC-1_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAG9297478
LinkDB
All DBs
Position
CEDIAZO_genome:complement(2837241..2839253)
Genome browser
AA seq
670 aa
AA seq
DB search
MPAIESQLEQLRQQLNDYAYQYYVLDDPTVPDSEYDRLFKQLQALEHEHPDLITADSPTQ
KVGGKALSEFTQVSHEIPMLSLDNVFDDDSLQAFILRVCERLGQYDLAFCAEPKLDGLAV
SILYEQGLLVQAATRGDGQTGEDITENVKTIRNVPLKLRGDYPARIEIRGEVVMPHKGFE
KLNEMRLKKQQKPFANPRNAAAGSLRQLDSKITAQRPLIFYAYAIGVCEGALPETHFERL
MQLRQWGMSVSQEVRLVEGDQGCLDFYHSIGTRRDSLDYDIDGVVYKVNSIAAQEQLGFV
ARAPRWAIAHKFPAQEQLTILKGVEFQVGRTGAITPVARLEPVAVGGVMVSNATLHNADE
IDRLGVKVGDTVTVRRAGDVIPQITGVVMDRRPNDAQAVVFPTHCPVCGSDIERIEGEAV
ARCAGGLSCAAQRKEALSHYVSRKAMDIDGLGGKLIDQLVENNFIHTPADLYHLREKAVE
LLNLERMGERSLEKLLDAIDKSRQTVFNRFLYALGIREVGESTALNLAQYFGNLDALMQA
QVEQLQKVSDVGEVVAKHVYYFFRQEENLKVVSALREELTWPDMVVKNEQQLPLAGQTFV
LTGTLNQFNRSDAKARLQALGAKVAGSVSKNTDVVVAGEAAGSKLAKAEQLGITVYDEDQ
LVELFALHEA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaattgagtcgcaactagagcaactacgtcagcagctaaacgactacgcctat
caatactatgtacttgatgatccaaccgtgcctgatagtgaatatgatcgattatttaaa
cagcttcaggcattagaacatgagcatccagacctaattacagctgattctccaacccag
aaagttggggggaaagcccttagtgaatttacccaggtcagccatgaaattccgatgcta
tcgttagataacgtctttgatgatgactcacttcaggcgttcattttaagagtctgtgaa
cgattagggcagtatgatttagcgttttgtgccgagccgaaattggatggcttagccgtc
agtattctctatgaacaagggcttctggtacaagcggcaacccgcggggatggccagacg
ggtgaagatatcactgaaaacgttaaaacgattcggaatgtgccgcttaaattgcgtggt
gattatccagcgcgtattgagattcgcggtgaagtcgtcatgcctcataaggggtttgaa
aagctgaatgagatgcggctgaaaaagcagcaaaaaccatttgccaatccacgtaatgcg
gcagctggcagtttacgtcaattggactcaaaaattactgcacaacggccattgatcttt
tatgcatatgccattggtgtgtgtgaaggggctctgcctgagacacactttgagcgttta
atgcaattacgccagtggggaatgtcggtcagtcaagaagtccgcttagtcgaaggggac
caagggtgcttagatttttaccactctattggcacacggcgtgattcactcgattatgat
atcgatggcgtcgtttataaggtcaactctattgcagcccaagagcaactgggatttgtc
gccagagcgcctcgctgggcaattgcgcataagtttccagctcaggaacagttaacgatt
ctaaaaggcgtagagtttcaggttgggcgaaccggtgcgattacacctgttgctcgcctg
gaaccagttgctgtgggtggggtgatggtgagtaatgcaacattacataacgccgatgag
attgaccgccttggtgtgaaagttggcgatactgtaacggtgcgaagggccggtgatgtg
attccacagatcactggcgtcgtgatggatcgtcgcccaaatgatgctcaagcggtggtg
tttccgactcattgcccggtgtgtggttctgatatagaacggattgagggtgaagctgtt
gcgcgttgtgcgggaggtttaagctgcgctgcgcaacgcaaagaggctttgagccactat
gtatcgcgtaaagcgatggatattgacggcttaggcgggaagctgattgatcagctggtt
gaaaataatttcattcatacgccggctgatctttaccacttgcgtgaaaaggctgtggag
ttacttaaccttgagcgaatgggagagcgctcgctagaaaaactgcttgatgcaattgac
aagtctcgtcagacggtttttaaccggtttttatacgcacttgggattcgcgaagtggga
gagtctacggcactgaatctggcccagtattttggtaatctggatgcactcatgcaagcg
caagttgagcaattgcaaaaggtatcggatgtcggggaagttgtggcgaagcacgtttat
tatttcttccgtcaagaggaaaatcttaaggtcgtaagtgcactgcgcgaagagttgacc
tggcctgatatggtggttaaaaacgagcaacagttaccattagctggtcagacgtttgtg
ctaactgggacattaaaccagtttaaccgttctgatgcgaaggcccgtttgcaggcatta
ggtgccaaagtggccgggagtgtctcgaaaaataccgatgtggttgtggctggggaggcg
gctggttcaaaacttgctaaagctgaacagctcgggattactgtctatgatgaagatcag
ctggttgagttatttgctctgcatgaagcttga
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