Carnobacterium divergens: BFC22_04770
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Entry
BFC22_04770 CDS
T05644
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdj
Carnobacterium divergens
Pathway
cdj03030
DNA replication
cdj03410
Base excision repair
cdj03420
Nucleotide excision repair
cdj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BFC22_04770 (ligA)
03410 Base excision repair
BFC22_04770 (ligA)
03420 Nucleotide excision repair
BFC22_04770 (ligA)
03430 Mismatch repair
BFC22_04770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdj03032
]
BFC22_04770 (ligA)
03400 DNA repair and recombination proteins [BR:
cdj03400
]
BFC22_04770 (ligA)
Enzymes [BR:
cdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BFC22_04770 (ligA)
DNA replication proteins [BR:
cdj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BFC22_04770 (ligA)
DNA repair and recombination proteins [BR:
cdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BFC22_04770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BFC22_04770 (ligA)
MMR (mismatch excision repair)
DNA ligase
BFC22_04770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BFC22_04770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ANZ99459
LinkDB
All DBs
Position
1053134..1055158
Genome browser
AA seq
674 aa
AA seq
DB search
MTEKYSFDQAKEEVFQLRTKLEQYSYEYYVKDNPSIEDHEYDKLYHRLVDLETEFPDLVT
GDSPTQRVGGTVLPGFTKVVHEIPMLSLGNAFNKNDLLDFDQRIKKLVEGEVEYICELKI
DGLAVSLKYEEGKLVQAATRGDGTVGEDITQNIRTVKSVPLRLKKPYSIEVRGECYMPKS
SFLKLNKEREENGEDVFANPRNAAAGSLRQLDPKIAAKRNLSTFLYTVADFGELTATSQE
EALNQLDELGIKTNHERKLCQSIEEVCQYVEAFHEKRSELPYEIDGIVIKVNRFSTQEKL
GFTVKAPRWAIAYKFPAEEAQTIVREIEWTVGRTGVVTPTAIMDPVRLAGTTVQRASLHN
VDLIKERDIRLLDTVVIHKAGDIIPEVTRVVLDKREKTSEPYQIPTHCPACDSELVHLEE
EVALRCMNPKCPAQITEGLSHFVSRNAMNIDGLGNKVIIQMYEKDLVHDVADLYKLTFEE
LLTLDKIKEKSANNLLAAIDNSRSNSVERLLFGLGIRHVGAKAAKLVAEEFGSMTGIRQA
TKEEILAIDGIGDIIAESLQTYFSLPEVTELINELATLQVNLDYLGKKKNEVVQSDSVFN
GKTIVLTGKLTHFTREEAKVRIENLGGNVTGSVSKKTDIVVAGSDAGSKLAKAEKLEITV
WNEDQLLEQLEGEE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaagtattcatttgatcaagccaaagaagaagtttttcaattaagaactaaa
ttagaacaatatagttatgaatactatgtaaaagataacccctccattgaggatcatgaa
tacgataaactttatcaccgtttagttgaccttgaaacggaatttcccgatttagtaact
ggagattccccaacccaacgagtgggtggcactgttttaccaggctttacaaaagtagtt
catgaaattccaatgctaagtttaggcaatgccttcaataaaaacgatttgcttgatttt
gatcaacgaattaaaaaattggttgaaggagaggttgaatacatttgcgagttaaagatt
gatggactggcagtgtcgttgaaatatgaagaaggaaaactagttcaagcagctacaaga
ggagatggaacagttggcgaagatattacgcagaatatcagaacggtgaaatcagtccca
ctccgcttaaaaaaaccttattcaattgaagttcgtggcgaatgctatatgccaaagtct
tcatttttaaaattaaataaagaacgagaagaaaatggcgaagatgtttttgctaatcca
agaaatgcggcagcaggtagtttgcgccagttagaccctaaaatagcggctaagcgtaat
ctgagtacttttttatacacagtagctgactttggtgaattgacagcgactagtcaagaa
gaagctttaaatcaattagacgaattaggcatcaaaacaaatcatgaacgcaagttgtgt
caatcaatagaagaagtgtgtcagtatgtcgaagcgtttcatgaaaaaagaagcgaatta
ccttatgaaattgatggaattgtaatcaaagtcaaccgtttttcaacacaagaaaaacta
ggtttcacagttaaagcaccccgctgggctattgcgtataaatttccagcagaagaagct
cagacgattgtaagagaaattgaatggacagtaggtcgaacaggagttgtaacgccaaca
gctatcatggaccccgttcgtttagctggtacaacggttcaacgagcaagcttacacaat
gtagacttaattaaagagcgcgacattcgtttactcgacacagttgttattcataaagca
ggagatattattccagaagtaacgagagtagtccttgataaacgtgaaaagacaagtgaa
ccttaccaaatcccaacccattgtcccgcttgtgacagtgaattggttcacttagaagaa
gaagtcgcactgcgttgtatgaacccaaaatgccctgctcaaattacggaaggcctgtct
cattttgtttcaagaaatgcaatgaacatcgatggtctaggcaataaagtcatcattcaa
atgtacgaaaaagaccttgtacacgatgtagcagatttgtataaactcacatttgaagaa
ctgcttacactagataaaatcaaagaaaaatcagctaataatctattggcggcgatcgat
aatagtcgaagcaattcagttgagcgcttattattcggcttagggattcgtcatgttggt
gctaaggctgctaaattggtagcagaagagttcggctcaatgactggaatccgtcaagca
acgaaagaagaaattttagcaatcgatggaataggtgacattattgcagaaagtcttcaa
acttatttttcattacctgaagtaacggaattgataaacgaattagcaactttgcaagtg
aatttagattacttaggaaagaaaaaaaacgaagtcgtacaaagtgattcagtattcaat
ggaaaaacgattgtcttaactggaaaactaacgcatttcacgcgagaagaagccaaagtt
cgaattgaaaatcttggtggaaatgtaacgggaagcgtatcgaaaaaaacggatattgtc
gtagcaggatcggatgcgggtagtaaactagcaaaagctgaaaagttagaaattacggtt
tggaatgaagatcaattactagaacaactggaaggagaggaataa
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