Castellaniella defragrans: BN940_05236
Help
Entry
BN940_05236 CDS
T03058
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdn
Castellaniella defragrans
Pathway
cdn03030
DNA replication
cdn03410
Base excision repair
cdn03420
Nucleotide excision repair
cdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN940_05236
03410 Base excision repair
BN940_05236
03420 Nucleotide excision repair
BN940_05236
03430 Mismatch repair
BN940_05236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdn03032
]
BN940_05236
03400 DNA repair and recombination proteins [BR:
cdn03400
]
BN940_05236
Enzymes [BR:
cdn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN940_05236
DNA replication proteins [BR:
cdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN940_05236
DNA repair and recombination proteins [BR:
cdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN940_05236
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN940_05236
MMR (mismatch excision repair)
DNA ligase
BN940_05236
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN940_05236
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CDM23516
UniProt:
W8X311
LinkDB
All DBs
Position
1126621..1128795
Genome browser
AA seq
724 aa
AA seq
DB search
MTARADAHAAGQGGSRPDPAAPDAAADTAAVARAAADRQRLEALRAEIESHNRRYYVEDA
PSVSDAQYDRLMAELQALEREHPDWVTPDSPTQRVGAAPLAHFATVRHAVRMLSLGNAFD
AEDIVAFDERIVSTLIGSGLLAGAAPEAGVAYVAEYKFDGLAVSLRYEGGRLVQAATRGD
GARGEDITANIRTLRSVPLRLRGEAPAVLEVRGEVLMTRADFARLNEAQVARGDKPFVNP
RNAAAGSLRQLDPRVTATRPLRFYAYGWGQIQDDRGADLRPRPTHSAMLDWLAGFGFAVS
PGRTACRGAAGLLRFYETVGASRAELPYEIDGVVYKVDDLRAQDVLGFVARAPRFAIAHK
FPAQEETTRLIGIEVQVGRTGALTPVARLQPVFVGGVTVTNATLHNEDEIRRKDVRIGDT
VVVRRAGDVIPEVVGPVLSLRPADAQVFDLLAACPVCPVCGSAVERPGGEAITRCTGGLF
CPAQRKQTLWHAASRKALDIDGLGDKLIEQLVDSGRVHTLADLYKLADPAGGGELVLASY
PRMGAKSARNLVEAINQRRRPPLSRLLYALGIRHVGETTARDVARHFGSIEAIMDASEEE
LLQVPDVGPVVAASIRRFFAEAHNREVIAALRAEGVEPQADAAPAGEKPLAGKTLVLTGT
LPTLSRDEATRLILAAGGKVSGSVSRKTAWVVAGEDAGSKLAKAAELGVAVIDEAGLQAL
LGQG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcacgcgccgacgcgcacgccgccggccagggaggctcgcggccggacccggcg
gcgccggacgccgcggccgacacggccgccgtggcccgggcggccgccgaccggcagcgc
ctggaggccctgcgcgccgagatcgagagccacaaccgccgctactacgtcgaggacgcg
ccctccgtctcggacgcgcagtacgaccgcctgatggccgagctgcaggccctcgaacgc
gagcatccggactgggtgacgcccgattcccccacgcagcgggtcggcgcggcgccgctg
gcgcatttcgccaccgtgcggcacgccgtgcgcatgctgtcgctgggcaacgccttcgac
gccgaggacatcgtcgccttcgacgagcgcatcgtctccaccctgatcggatccggcctg
ctggccggcgcggcgcccgaagccggcgtcgcctacgtcgcggaatacaagttcgacggc
ctggccgtcagcctgcgctacgagggcgggcgcctggtgcaggcggcgacccggggcgac
ggcgcccggggcgaggacatcaccgccaacatccgcacgctgcgctcggtgcccctgcgc
ctgcggggcgaggcgcccgccgtgctcgaagtgcgcggcgaggtcctgatgacgcgggcg
gacttcgcgcgcctgaacgaggcccaggtcgcccggggcgacaagcccttcgtcaatccg
cgcaacgccgcggccggcagcctgcgccagctcgatccgcgtgtgacggccacccggccg
ctgcgcttctacgcctacggctgggggcagatccaggacgatcgcggcgccgacctgcgg
ccgcgccccacccattccgcgatgctggactggctggccggcttcggcttcgccgtcagc
cccggccgcacggcgtgccggggcgcggccggattgctgcgcttctacgagaccgtgggg
gcgtcgcgtgcggagctgccctacgagatcgacggggtggtctacaaggtggacgacctg
cgcgcccaggacgtgctgggtttcgtcgcgcgcgcgccgcgcttcgccatcgcgcacaaa
ttccccgcccaggaggaaaccacccggctgatcggcatcgaagtccaggtggggcgcacc
ggcgcgctgacgccggtggcccggctgcagccggtcttcgtcggcggcgtgaccgtcacc
aacgccacgctgcacaacgaggacgagatccgccgcaaggacgtgcgcatcggcgacacc
gtggtggtgcgccgcgccggcgacgtgatccccgaggtggtcgggccggtgctgtcgctg
cgcccggcagacgcccaggttttcgacctgctggccgcctgtccggtgtgccccgtctgc
ggctcggcggtcgagcgcccggggggcgaggccatcacgcgctgcaccggcgggctgttc
tgccccgcgcagcgcaagcagaccctgtggcatgccgccagccgcaaggccctggacatc
gacggcctgggcgacaagctgatcgagcagctggtggacagcggcagggtccacaccctg
gccgacctgtacaagctggcggacccggcgggcgggggggaactggtgctggccagctat
ccccgcatgggggcgaaatcggcgcgcaacctggtggaggcgatcaatcagcgccgccgc
ccgccgctgtcgcgcctgctgtacgccctgggcatccgccacgtgggcgagaccaccgcg
cgcgacgtggcgcggcatttcggctccatcgaggccatcatggacgcctccgaggaagaa
ctgctgcaggtgccggacgtcggcccggtggtggcggcctcgatccggcgcttcttcgcc
gaggcgcacaaccgcgaggtcatcgccgcgctgcgcgccgagggagtcgagccccaggcc
gacgcggcgcccgccggcgaaaagcccctggcgggcaagaccctggtgctgacgggcacc
ctgcccaccctgagccgcgacgaggccacgcgcctgatcctggccgccggcggcaaggtc
agcggctcggtatcgcgcaagaccgcctgggtggtggccggcgaggacgccggcagcaag
ctcgccaaggccgccgaactgggcgtggccgtgatcgacgaagccggactgcaggcgctg
ctggggcagggctga
DBGET
integrated database retrieval system
