KEGG   Chelatococcus daeguensis: BOQ54_12610
Entry
BOQ54_12610       CDS       T04583                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cdq  Chelatococcus daeguensis
Pathway
cdq03030  DNA replication
cdq03410  Base excision repair
cdq03420  Nucleotide excision repair
cdq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cdq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BOQ54_12610
   03410 Base excision repair
    BOQ54_12610
   03420 Nucleotide excision repair
    BOQ54_12610
   03430 Mismatch repair
    BOQ54_12610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cdq03032]
    BOQ54_12610
   03400 DNA repair and recombination proteins [BR:cdq03400]
    BOQ54_12610
Enzymes [BR:cdq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BOQ54_12610
DNA replication proteins [BR:cdq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BOQ54_12610
DNA repair and recombination proteins [BR:cdq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BOQ54_12610
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BOQ54_12610
   MMR (mismatch excision repair)
    DNA ligase
     BOQ54_12610
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BOQ54_12610
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HALZ DUF3701 HHH
Other DBs
NCBI-ProteinID: APF38066
UniProt: A0AAC9JT28
LinkDB
Position
complement(2663377..2665554)
AA seq 725 aa
MSERSSSSTAGASLRDVAVEVLTPREAKREHAALAAEIAEHDRRYFGEDAPTISDADYDA
LRRRYEALEARFPDLATDESLTKKVGTRPSEKFAKVRHRVPMLSLSNAFADEDVAEFVVR
IRRFLGLAPDAPLVITAEPKIDGLSISLRYEKGRLVTAATRGDGEEGEDVTANARVVDAI
PKEIDAADMPEVFEVRGEVYMRHADFAAINQRQAEAGKPLFANPRNAAAGSLRQLDPAVT
ARRPLAFFAYAWGDVSALPADTQMGVVEALGRWGFPINPLMKRCHSVEDLLARYHAIEAD
RANLGYDIDGVVYKVDSLALQERLGFVSRSPRWAIAHKFPAERAMTELLDIEIQVGRTGA
LTPVAKLKPVTVGGVVVANATLHNEDYIRGIGGDGQPIRGGIDIRIGDTVEIQRAGDVIP
QVLGVVMDKRPAGSEPYRFPATCPACGSHAVREINPRTGREDAVRRCTGGLTCPAQAMER
LKHFVSRNALDIDGLGDKQIELFFREGLVHGPQDIFTLAERDAASLKKLKDREGFGETSV
RNLFAAIEARRRVPLNRFIFALGIRHVGETTAKLLARHYGTFEALRAALIAARDRASEAW
AELNAIDGIGEVVAEALVQFFAEPHNETTLDALLTQVTPQEMERTVTIESPVAGKTVVFT
GTLVRMSRDEAKAMAERYGAKVAGSVSKKTDLVVAGPGAGSKLAKAQELGVEVIDEDGWF
TLVGA
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgtccgaacgttcttcgtcctccacagcgggtgcttccctgcgcgacgtcgccgtcgag
gtattgacgccgcgggaggcgaagcgcgagcacgcggccctcgccgccgagatcgccgag
cacgaccgccgctatttcggcgaggatgcgcccaccatctccgatgccgattatgatgcc
ctgcggcgccgctacgaggcgctggaggctcgctttcccgaccttgccaccgacgagagc
ctgacgaagaaggtcggcacccggccgagcgagaaattcgccaaggtgcgccaccgcgtg
cccatgctgtcgctgtcgaatgccttcgccgacgaggacgtcgcggagttcgtcgtgcgg
atccgccgctttctgggcctcgcccccgacgcgccgcttgtcatcaccgccgagccgaag
atcgacggcctgtccatcagcctgcgctacgagaagggtcgcctcgtcacggccgcgacg
cgcggcgacggggaggagggggaggacgtgacggccaatgcccgcgtcgtcgacgccatc
cccaaggagatcgacgccgccgacatgcccgaggtgttcgaggtgcgcggcgaggtctac
atgcgccatgcggatttcgcggccatcaaccagcgccaggcagaggccgggaagccgctc
ttcgccaatccgcgcaatgccgcggcgggctcgctacgccagctcgacccggcagtcacc
gcacgccggccgctcgccttcttcgcatacgcctggggtgacgtgtcggccctgccggcc
gacacgcagatgggggtggttgaggcgctggggcgctggggctttcccatcaacccgctg
atgaagcgctgccacagcgtcgaggatctgctcgcccgctatcacgccatcgaggccgac
cgggccaatcttggctacgacatcgacggcgtcgtctacaaggtggacagtttggctcta
caggagcgcctcggcttcgtctcgcggtcgccgcgctgggccatcgctcacaagttcccc
gccgagcgggcgatgaccgagttgctcgacatcgagatccaggtggggcggacgggggcg
ctgacgcccgtggcgaagctgaaacccgtcacggtgggcggcgtcgttgtcgccaacgcg
acgctgcacaacgaggactacatccgcggcatcggcggcgacggccagccgatccgcggt
ggcatcgatatccgcattggcgacacggtcgagatccaacgcgccggcgacgtcatcccg
caggtgctcggcgtcgtcatggacaagcgcccggccggctccgaaccctaccgcttcccg
gccacatgcccggcctgcggaagccatgcggtgcgcgagatcaacccccgcacggggcgg
gaggacgccgttcggcgctgcacaggcgggcttacctgcccggcgcaggccatggagcgc
ctgaagcacttcgtgtcgcgcaacgcgctcgacatcgacggcctcggcgacaagcagatc
gagctcttcttccgcgagggactggtgcacggcccgcaggatatcttcacactggccgag
cgcgatgcggcgagcctgaagaagctgaaggaccgcgagggcttcggcgagacgagcgtg
cgcaacctcttcgcggccatcgaggcgcgccggcgggtgccactcaaccgcttcatcttc
gcgctcggcatccgccatgtgggcgagacgacggcgaagctcctcgcccgccactacggc
accttcgaggcgctgcgggcggccctgatcgccgcccgcgaccgcgcatcggaagcctgg
gcggagctcaacgccatcgacggcatcggcgaggtggtggcggaggcgctggtgcagttc
ttcgccgaaccgcacaatgagacgactctggacgcgctgcttacacaagtgacgccgcag
gagatggaacggacggtgaccatcgagagtccggtcgcgggcaagacggtggtcttcacc
ggcacgctcgtgcgcatgtctcgcgacgaggccaaggccatggccgagcgctacggcgcc
aaggtagcgggttcggtatcgaagaagaccgacctcgtggtggccgggccgggcgctggc
tccaagctcgccaaggcgcaggagctcggtgtggaggtcatcgacgaggacggctggttc
acgctcgttggggcgtga

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