Corynebacterium diphtheriae VA01: CDVA01_0949
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Entry
CDVA01_0949 CDS
T01702
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdv
Corynebacterium diphtheriae VA01
Pathway
cdv03030
DNA replication
cdv03410
Base excision repair
cdv03420
Nucleotide excision repair
cdv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDVA01_0949 (lig)
03410 Base excision repair
CDVA01_0949 (lig)
03420 Nucleotide excision repair
CDVA01_0949 (lig)
03430 Mismatch repair
CDVA01_0949 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdv03032
]
CDVA01_0949 (lig)
03400 DNA repair and recombination proteins [BR:
cdv03400
]
CDVA01_0949 (lig)
Enzymes [BR:
cdv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CDVA01_0949 (lig)
DNA replication proteins [BR:
cdv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDVA01_0949 (lig)
DNA repair and recombination proteins [BR:
cdv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CDVA01_0949 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDVA01_0949 (lig)
MMR (mismatch excision repair)
DNA ligase
CDVA01_0949 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDVA01_0949 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
AEX83218
LinkDB
All DBs
Position
998820..1000853
Genome browser
AA seq
677 aa
AA seq
DB search
MTDNFADLRRQWDDLAEQVRHHRDAYYNHTPEISDAEFDQLFRQLQQLEQEHPELAVPES
PTLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRTPSATYLTELKIDGLSIDL
VYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHCLQHSDAYPVPELVEIRGEVFIAVED
FALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEGFEADSQFD
AYKALEAWGLPVSPYTKRVHSAQEVHERVTYWAQHRHDATHEMDGLVIKIDSFAEQRAQG
STARAPRWAIAYKYPPEEVTTKLLNIQVGVGRTGRVTPFAVMDPVFVAGSTVEMATLHNQ
TEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGSEREFIFPTLCPACGTRLAPQKED
DADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGEKGAEDLIASGVLIDEAQLFNLTED
DLKRTKVYTTKAGALNATGEKLLANLESAKHTDLWRVLVALSIRHVGPTAARALAARYRS
LEALRAADVEDIANTEGVGAIIAQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQV
LEGLTIVVTGSLVDFSRDSAKEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGL
RILNEDEFKQLLANGTV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgactgataattttgctgatctacgccgccagtgggacgaccttgccgaacaagttcgt
caccatagagatgcctattacaaccacacccctgaaatctcagacgcggagtttgatcag
cttttccgccagctgcagcaattagaacaggaacacccagaattagctgtgcccgaaagc
cccactttgagagtcggcgctccagttgaacagagttctttcgacaatgtcgagcacctt
gagcgcatgctcagtctggacaatgtttttgacgctgccgagcttgatgattggttgcag
cgaacccccagtgctacgtatcttactgagcttaaaatcgatggtctgtctatcgatttg
gtctatcgttctgggcgtcttgagcgggcggctactcgtggcgatggtcgggtaggagaa
gatgttactgctaacgccaaagttattgaggacatcccgcattgtcttcagcattctgat
gcataccccgtgccagaacttgtcgaaatccgcggcgaggtattcattgccgtagaagat
ttcgctttagtcaatgaacaacgccaaaaagaaggcggaaagccgttcgcaaacccacgt
aatgccgctgctggatcgctgcgacaaaaagatactgaggccgttcgtaaacgccggttg
aagatgatttgtcatggaatcggtgcttcagagggatttgaagcagatagtcagttcgat
gcatataaagccctagaagcatggggtctgccagtatcgccgtatacaaaacgtgtccac
tcggctcaagaagttcatgagcgtgtgacctactgggcacagcatcgccacgatgcgacc
catgagatggacgggttggttatcaagatcgattcctttgcagaacagcgcgcgcaagga
tccactgcccgcgcgcctcgctgggcaatcgcctacaaatatcctccagaagaagtgacc
accaagcttcttaatatccaggtcggcgttgggcgtaccggcagggtgacaccctttgcc
gttatggacccagtgttcgttgctggatccaccgtagagatggctacgttgcataaccag
accgaagtaaaacgaaaaggcgttcttatcggcgataccgtggttattcgcaaagctggc
gaagtgatcccagaggttctcggtcctgttgttgaaaaacgtgacggtagcgaacgcgaa
tttattttcccgacactatgcccagcatgtggaacacgcctagcgccacaaaaagaagac
gacgccgactggcgatgcccgaactcccaatcgtgcccagcgcagttgtcctcacgtctt
acttatctagctggacgaggcgcatttgatatcgaagccctcggagaaaaaggagctgag
gatcttattgcctccggcgtgcttatcgacgaagcccagctgtttaacctgacggaagac
gatcttaaacgcaccaaggtgtacaccaccaaagccggtgcgcttaacgcaactggtgaa
aagttgctggccaaccttgagtctgcaaagcatacggatctgtggcgtgttctcgttgca
ctgtcaatccgacacgttggaccaaccgcagccagagctcttgcggcacgttatcgaagc
ctcgaagcattacgggctgctgatgtggaggacattgctaatactgagggcgttggtgcg
attatcgcacagagcttcgcgcagtggtttgacgtgccatggcacagaaatatcgtagaa
gtatgggctgatgctggtgtcacaatggcggattcggaggcagatatccctgaccaagtt
ctagaaggattgaccattgtagtgaccggttctttggtcgatttttctagggattccgct
aaagaggcaattgtttctcgtggtggtaaagcaagcggctcggtttccaagaagaccagt
tacgtggtagtgggtgagaacgcaggtagcaaggaaacgaaagcccgtgatctgggattg
cgcatcctcaacgaagacgagtttaaacagttgttagcaaacggcaccgtctag
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