Corynebacterium deserti: CDES_06030
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Entry
CDES_06030 CDS
T04068
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cdx
Corynebacterium deserti
Pathway
cdx03030
DNA replication
cdx03410
Base excision repair
cdx03420
Nucleotide excision repair
cdx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDES_06030 (ligA)
03410 Base excision repair
CDES_06030 (ligA)
03420 Nucleotide excision repair
CDES_06030 (ligA)
03430 Mismatch repair
CDES_06030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cdx03032
]
CDES_06030 (ligA)
03400 DNA repair and recombination proteins [BR:
cdx03400
]
CDES_06030 (ligA)
Enzymes [BR:
cdx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CDES_06030 (ligA)
DNA replication proteins [BR:
cdx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDES_06030 (ligA)
DNA repair and recombination proteins [BR:
cdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CDES_06030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDES_06030 (ligA)
MMR (mismatch excision repair)
DNA ligase
CDES_06030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDES_06030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ALC05636
UniProt:
A0A0M5IIV9
LinkDB
All DBs
Position
1236030..1238069
Genome browser
AA seq
679 aa
AA seq
DB search
MTEDNAQLRRTWNELAEKIRYHRDLYYNSTPEIPDADFDELFQSLIRLEEEHPELAVPDS
PTMLVGAPTAAQSSFDNVEHLERMLSLDNVFDESELRDWLTRTPAKQYLTELKIDGLSID
LVYRNGRLDRAATRGDGRVGEDITVNAKVIDDIPHELHGTEEFPLPDVLEVRGEVFITVE
DFPEVNAQRIADGGKPFANPRNAAAGSLRQKNVEDVKKRRLRMISHGIGYTEGFNPASQH
DAYLALAAWGLPTSPYTEAVTDPEEVVKKVAYWADHRHDALHEMDGLVIKVDDIASQRAL
GSTSRAPRWAIAYKYPPEEVTTVLRDIQVGVGRTGRVTPFAVMEPVFVAGSTVSMATLHN
QSEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREFIFPTLCPECGTTLAPAKA
DDVDWRCPNTQSCPGQLSTRLTYLAGRGAFDIEALGEKGADDLIRSGILTDESGLFDLTE
DDLLRSKVYTTKAGKVNATGKKLLANLAESKNTDLWRVLVALSIRHVGPTAARALAGRYR
SMQALIDAPLDELSDTDGVGTIIAQSFKEWFDVDWHRAIVDTWAAAGVTMEEEVGEVAEQ
TLEGLTIVVTGGLEGFTRDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELG
LRILDEAGFVRLLETGSAE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaagataacgctcaacttcgacggacctggaatgaactggctgaaaagatcagg
taccaccgggatttgtactataactcaacccctgagattcctgatgcggatttcgacgag
ctgttccagagccttattcgtttggaagaagagcacccagagctcgcagttccagacagc
cccacgatgttggtgggtgctcccacggctgcgcaatcaagctttgacaatgtcgaacac
cttgagcggatgctcagcctggacaatgttttcgatgagtcagagctgcgcgattggctc
acccgcacgcctgcaaagcagtacctcactgagctcaaaatcgatggtctctccatcgat
ctcgtctaccgaaatggccgcctagaccgggccgccactcgtggtgatggtcgtgtaggc
gaggacattaccgtaaacgccaaagtgatcgacgacatcccgcatgagctccacggcacg
gaggagttccctctgccagatgttctagaagtccgcggtgaggtcttcatcactgtggag
gatttcccagaggtcaatgcgcagcgcatcgccgatggcggaaagcccttcgccaacccg
cgcaatgctgctgccggatctttgcgccagaaaaacgttgaggacgtcaagaagcgtcgc
ttgcggatgatcagccacggcattggatataccgaaggcttcaacccagcgtcccagcat
gatgcctaccttgctctcgcagcatgggggctgcctacctcgccctataccgaagcggtc
accgatccagaagaggtggttaaaaaggttgcgtattgggccgatcaccgccatgacgcc
ctccacgagatggacggtttggtcatcaaggtcgatgacatcgcttcccaacgtgcgttg
ggctccaccagcagggcgccacgttgggccattgcctataaatacccgccggaagaagtc
accacggtgctgcgtgatattcaggttggcgttggcagaactggccgtgtcacaccattc
gctgtcatggagcctgtattcgttgccggttccacagtgtcgatggccaccctgcacaac
cagagcgaagtcaaacgcaaaggcgtgctcatcggcgataccgtcgtgatccgcaaagcc
ggcgaagtcatcccagaggttttgggtcccgtcgtcgagctgcgcgatggtactgagcgc
gagttcattttccccacgctgtgcccagaatgtggcaccacattggccccagcgaaagct
gatgacgtcgattggcgttgccccaacacccaaagctgcccaggtcagctctctacgcgc
ttgacctaccttgctggccgcggcgccttcgacattgaagcgctcggtgaaaaaggtgca
gacgatcttattcgttccggcatcctcaccgatgaatccggtctcttcgacctcaccgag
gacgatctgctgcgttccaaggtgtataccaccaaggctggcaaggtcaacgccacaggc
aaaaaactgctggccaacctggcagaatccaaaaacactgacctttggcgtgtcctcgtc
gccctctcaatcaggcatgtaggccccaccgcagcgcgcgcccttgcaggccgctaccgc
tcaatgcaggcgcttatcgacgctcccctcgacgaactttccgacaccgacggtgttggc
accatcattgcccaatcgtttaaagaatggttcgacgttgattggcaccgcgccatcgtc
gatacctgggcagctgctggagtcaccatggaggaagaagtcggcgaggtcgctgaacaa
accctcgaaggactcaccatcgttgtcaccggtggtcttgaaggatttactcgagactcc
gtcaaagaagccattatctccagaggtggcaaggcgtctggttcagtgtctaagaagacg
gactacgtggtggttggtgaaaacgccggatccaaggccaccaaggcagaagaattggga
ctacgcattttggacgaagccggattcgtgcggctgctcgaaaccggctcggctgagtaa
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