Dickeya fangzhongdai ND14b: LH89_02920
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Entry
LH89_02920 CDS
T03347
Symbol
rumB
Name
(GenBank) 23S rRNA methyltransferase
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
ced
Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ced03009
]
LH89_02920 (rumB)
Enzymes [BR:
ced01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
LH89_02920 (rumB)
Ribosome biogenesis [BR:
ced03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LH89_02920 (rumB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Methyltransf_12
Cons_hypoth95
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
AIR68212
LinkDB
All DBs
Position
complement(673949..675079)
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AA seq
376 aa
AA seq
DB search
MQCARYNDGSCRSCQWLEIAYPQQVSDKQQHLIGLLSAHPVQQWLSPVTSAEVAFRNKAK
MVVSGSVERPLLGMLHRDGSAVDLCDCPLYPDSFAPVFAILKAFIARAGLTPYNVARRRG
ELKYLLLTQSTLSGRFMLRFVLRSETKLAQLRAALPWLQQQLPQLAVISANIQPVHQAIL
EGEQEIPLTEAQALEERFNQVPLYIRPQSFFQTNPQVAAALYDTARQWVSTLPVRSLWDL
FCGVGGFGLHCASPGTPLTGIEISPEAIACARRSAAQLGLTDVSFAALDSTRFAVGETQT
PDLVIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMARDIARLPAYQIQQAQLFDMF
PHTAHYEVLALLQRRV
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgtgcccgctataacgacggttcgtgccgttcctgccaatggctggaaatcgcc
tatccgcagcaggtgagcgataagcagcagcacctgatcggattgctgtccgcccatccg
gttcaacaatggttgtcgccggtaacctcggcggaagtcgcctttcgcaataaagccaag
atggtggtcagcggcagtgtggaacgcccgttgttggggatgctgcaccgtgacggttcg
gcggtggatctctgcgactgcccgctgtatcccgacagctttgcgccggtgttcgccata
ctgaaagcattcatcgcccgtgccggtttaaccccctataacgtcgcccggcgccggggg
gaactgaaatacctgttgttgacgcaaagcaccctgagcggtcgcttcatgctgcgcttt
gtgctgcgatccgaaaccaagctggcgcaattgcgcgccgcgttgccctggctgcagcag
cagttgccgcaactggcggtaatatcggcgaatattcagccggttcatcaggcgatactg
gaaggggagcaagagattccgctgacggaagcgcaggcgctggaagagcgctttaatcag
gtaccgctgtatatccggccgcaaagtttcttccagaccaacccgcaggtggcggcggcg
ctgtatgacaccgcccggcagtgggtgtcaacgttgccggtgcgcagcctgtgggatctg
ttttgtggcgtaggcggattcggcctgcattgcgccagccctggcacgccgcttaccggc
attgagatcagcccggaagccatcgcctgtgcccggcgttcggcggcgcagctggggctg
acagacgtcagtttcgccgcgcttgattccacccgctttgccgttggcgaaacccagacg
ccggatctggtgatcgtcaacccgccccggcgcggtatcggcgctgaattgtgcgattac
ctgagccgcatggcgccgccgtatctgttgtactccagctgcaatgccgagagcatggcg
agagacattgcgcgcctgccggcgtaccagatacagcaggcgcaactgttcgatatgttc
ccgcacaccgcgcattacgaggtgctggcgctgctgcaacgacgtgtttaa
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