Dickeya fangzhongdai ND14b: LH89_12845
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Entry
LH89_12845 CDS
T03347
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03030
DNA replication
ced03410
Base excision repair
ced03420
Nucleotide excision repair
ced03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH89_12845 (ligB)
03410 Base excision repair
LH89_12845 (ligB)
03420 Nucleotide excision repair
LH89_12845 (ligB)
03430 Mismatch repair
LH89_12845 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ced03032
]
LH89_12845 (ligB)
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_12845 (ligB)
Enzymes [BR:
ced01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH89_12845 (ligB)
DNA replication proteins [BR:
ced03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH89_12845 (ligB)
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH89_12845 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH89_12845 (ligB)
MMR (mismatch excision repair)
DNA ligase
LH89_12845 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH89_12845 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIR70048
LinkDB
All DBs
Position
2912346..2914028
Genome browser
AA seq
560 aa
AA seq
DB search
MRYRYALAAVLFVVSGLTEAASCPAWSSARAEQEIAQLGQQLTQWDNAYYEQGQSPVDDQ
VYDQLRQTLATWQVCFQTDTGRFAIALSTTGKRQHPVAHTGLKKLSEPAELKQWIAQHHD
LWVQPKIDGVAVTLVYEQGKLAAAISRGNGRQGEDWTDKVRQMNTVPQHLSGVSGRQVFQ
GELYLQVAGHRQQQVGGINARAQVAGEMRRKQPSPLLSRIGVFIWAWPDGPADMPARLAK
LRELGFGLTADYSQPVSSLETAAQWRERWYRAPLPFVTDGVVIRQAREPAGRYWQDTPAE
WAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVVLDDKTVSRVNLGSVSRWRQWD
VLPGDRVSVSLAGLGIPRLDAVVWRGAVREAITVPAASPFDVFSCLQWSRECQPQFLARL
VWMSGRNGLSLGGISEATWQRLTQRGALADVVSWLALEPAQLAAAGDFGEQQAERIHRQF
QRARRQPLRNWLLALGLPVPSRARHALDGASLEQLQQRSAAEWQQFSDIGVRRAQRIRDF
LHHPDIVRQLAWLNEQGVKS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcgatatcgatacgcgctggcggcggtgctgtttgttgtgagcgggctgaccgaagcg
gcgtcttgtccggcatggtcgtcggcgcgggctgaacaggaaatcgcccaactggggcag
caactgacgcagtgggacaacgcttattacgaacagggccagagcccggtggacgatcag
gtttacgatcaactgcgtcaaacgctggcgacctggcaagtctgttttcagacggatacc
gggcgttttgcgatagctctgtctaccaccggcaaacggcagcatccggtggcgcacacc
ggcctgaaaaagctgtcggaaccggccgaactgaagcagtggatcgcgcaacatcatgat
ttgtgggtgcagcccaagatcgatggcgtggcggtgacgctggtgtatgaacaagggaag
ctggctgccgccatcagtcgcggcaatggccggcagggcgaggactggaccgacaaggtg
cgccagatgaatacggtgccacagcatctttccggtgtatccggccgtcaggttttccag
ggcgaattgtatttacaggtggcgggccaccgtcaacagcaggtcggcggcatcaatgcg
cgagcgcaggtggcgggtgaaatgcggcgaaaacagccttcgccgctgctgtcccgtatt
ggcgtatttatctgggcctggccggacggcccggcggacatgccggcgagactggcgaaa
ttacgggaactagggtttgggctgacagcggattactcgcaacccgtttcctcgctggag
acggcggcgcagtggcgtgaacgctggtatcgtgcgccgctgccgtttgtgaccgatggc
gtggtgatacgtcaggcgcgggaacccgccggacgttactggcaagacaccccggcggag
tgggcggtggcctggaaatacccgttggtgaaccgggtgacggaagtcaccggcgtcgat
gttgaggtagggcgcaccggcagaatgaccgtggtgttgcaactgcagccggtggtgctg
gatgacaaaactgttagccgggtcaatctcggttcggtatcccgctggcggcaatgggat
gtgctgccgggggatcgggtcagcgtcagtctggcgggattggggattccccggctggac
gccgtggtttggcgcggcgcagtgcgtgaagcgataaccgtcccggcggcgtcgcctttt
gatgttttcagttgtttgcaatggagccgggaatgccagccacagtttctggcccgactg
gtatggatgagcgggcgcaacgggttgtcgcttggcggcatcagcgaagctacctggcag
cgactgacacagcgcggtgcgctggccgatgtggtgtcctggctggcgcttgaaccggcg
caactggcggcggccggtgatttcggcgagcaacaggcggaacggattcatcgccagttt
cagcgagcgcgtcgccagccgttgcgaaactggttgctggcgttaggactaccagtgcca
tcccgcgcccggcacgcgctggatggtgcatcgctcgaacagttgcagcagcgctccgcg
gcggaatggcagcagttttccgatatcggcgtccgacgggcgcagcgcattcgggacttt
ctgcaccatcccgatatcgtccggcaactggcatggctcaatgaacaaggcgtgaaatca
tga
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