Corynebacterium endometrii: CENDO_04910
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Entry
CENDO_04910 CDS
T06552
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cee
Corynebacterium endometrii
Pathway
cee03030
DNA replication
cee03410
Base excision repair
cee03420
Nucleotide excision repair
cee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CENDO_04910 (ligA)
03410 Base excision repair
CENDO_04910 (ligA)
03420 Nucleotide excision repair
CENDO_04910 (ligA)
03430 Mismatch repair
CENDO_04910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cee03032
]
CENDO_04910 (ligA)
03400 DNA repair and recombination proteins [BR:
cee03400
]
CENDO_04910 (ligA)
Enzymes [BR:
cee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CENDO_04910 (ligA)
DNA replication proteins [BR:
cee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CENDO_04910 (ligA)
DNA repair and recombination proteins [BR:
cee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CENDO_04910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CENDO_04910 (ligA)
MMR (mismatch excision repair)
DNA ligase
CENDO_04910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CENDO_04910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QCB28271
UniProt:
A0A4P7QF00
LinkDB
All DBs
Position
1074653..1076680
Genome browser
AA seq
675 aa
AA seq
DB search
MDPADIQRQWSELAQEVRKHRELYYNQQPVISDAEFDQLFRDLQKLEQEHPELAVPDSPT
QEVGAVPGDSAFADIEHLERMMSLDNVFSAEEMAEWLARTPAAAYLAELKIDGLSIDLVY
RDGKLVTAATRGDGRVGEDITANAKVIEDIPYELTGTDEYPVPALVEIRGEVYMKPSDFE
EVNAQRVEEGKPPFANPRNSAAGGLRMKDPEEVKKRRLHMIAHGIGAREGFNPVSQHDAY
QAISAWGLPVSPYTKRVETAKAVQEQVEYWADHRHDAEFEMDGLVVKVDDLASQRSYGAT
SRAPRWAIAYKYPPEEVTTKLLNIEVGVGRTGRVTPFAIMEPVFVSGSTVSMATLHNQSE
VKRKGVLIGDTVTIRKAGEIIPEVLGPVAELRDGSETQWEFPENCPSCGTKLAPQKEGDA
DWRCPNQRTCPAQLAARLEYLAGRGAFDIEALGEKGARDLIERGVLEDESDLFDLDEEKL
LGSDVYTTKAGKLNASGKKLLANLETARHTDLWRVIRALSIRHVGPTAARALATRYGSLE
SARQADVEDIAQTDGVGSIIAESFKDWFEVDWHRSIVDKWTAAGVTMEVDESDKAEQTLE
GLTIVVTGTLENFSRDSAKEAIIARGGKASGSVSKKTDYVVVGENAGSKETKARELGLRI
LNEEEFQQLLESGEA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtggacccggcggatatccagcgtcaatggtccgaacttgcccaggaggtgcgcaagcac
cgcgagctgtattacaaccagcagccggtgatttccgacgcggagtttgaccagctgttc
cgcgatctgcaaaagctagagcaagagcatccagaactggccgtcccggattccccgacc
caggaagtgggcgcagtccccggtgacagcgcgttcgcggacatcgagcacttagagcgc
atgatgagcctggataacgtctttagcgcagaggaaatggcggagtggctcgcccgcacc
cccgcggcggcctacctagctgagctcaagattgatggcctgtccattgacttggtttac
cgcgacgggaaactggtgaccgcggctacccgtggtgacggccgcgtgggtgaggatatc
accgctaacgccaaggtgattgaggatattccctatgagctcactggcaccgatgaatac
ccggtgccggccctggtggaaatccgcggtgaggtctacatgaagcctagcgatttcgaa
gaagtcaacgcccagcgcgtagaggagggcaagccgccgttcgctaacccccgcaattcc
gcggccggtgggctgcgcatgaaggatccggaagaggtaaaaaagcgccgcctgcacatg
attgcccacggtattggcgcacgcgagggatttaatccggtttcccagcacgatgcctac
caggccatttccgcgtgggggctacctgttagcccgtataccaagcgcgtcgagacggcc
aaggcggtccaggaacaggtggagtattgggcggatcaccgccacgatgccgagtttgaa
atggacggcctggtggtcaaggtagatgacctggcttcacagcgttcatacggtgccacc
tcgcgtgcgcctcgctgggcgattgcctataagtatccgccggaagaagtcaccacgaaa
cttctcaacatcgaggttggagtgggccgcaccggccgcgtgacccccttcgccattatg
gagccggtatttgtctccggctccaccgtatccatggccacgctgcacaatcagtccgag
gtcaagcgcaagggcgtgctcattggcgataccgtcaccatccgcaaggccggtgaaatc
attccggaggtcctgggtccggtagccgagctacgcgatggtagcgagacgcaatgggag
tttcccgagaactgcccatcgtgtggcaccaagctggccccgcagaaagaaggggacgcc
gactggcgttgcccgaaccagcgcacgtgcccagcccagctagctgcgcgcttggagtac
cttgccggccgcggcgctttcgatattgaggcgctgggtgaaaagggtgcccgggatctg
attgagcgcggcgtgctggaagacgaatcagatctctttgatttggatgaggaaaagctg
ctgggctctgacgtgtacaccaccaaggctggcaagctgaatgcatcgggcaagaagctc
ctggccaacttggagacggcccgtcatacggatttgtggcgcgtgattcgcgcgctatcc
atccggcacgtgggcccaaccgccgcccgagccctagccactcgctacggctcgctcgag
tccgcgcgtcaggcggacgtggaggatatcgcccaaaccgatggagtgggttccatcatc
gccgagtctttcaaggattggtttgaggttgactggcaccgcagcatcgtggacaagtgg
accgctgccggcgtgacgatggaggtcgatgagtcagacaaggccgagcaaacccttgag
gggctgaccatcgtggtaaccggcactttggagaacttctcccgcgattcggccaaggag
gccattatcgcccgcggaggcaaggcctctgggtctgtttcgaaaaagacggattatgtg
gtggtgggggagaatgccggctcgaaggagaccaaggcgcgtgaactgggcttgcgcatc
cttaacgaagaggagttccagcagctgcttgagtccggcgaagcataa
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