Cyanobacterium endosymbiont of Epithemia clementina: P3F56_06960
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Entry
P3F56_06960 CDS
T09382
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ceec
Cyanobacterium endosymbiont of Epithemia clementina
Pathway
ceec03030
DNA replication
ceec03410
Base excision repair
ceec03420
Nucleotide excision repair
ceec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ceec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P3F56_06960 (ligA)
03410 Base excision repair
P3F56_06960 (ligA)
03420 Nucleotide excision repair
P3F56_06960 (ligA)
03430 Mismatch repair
P3F56_06960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ceec03032
]
P3F56_06960 (ligA)
03400 DNA repair and recombination proteins [BR:
ceec03400
]
P3F56_06960 (ligA)
Enzymes [BR:
ceec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P3F56_06960 (ligA)
DNA replication proteins [BR:
ceec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P3F56_06960 (ligA)
DNA repair and recombination proteins [BR:
ceec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P3F56_06960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P3F56_06960 (ligA)
MMR (mismatch excision repair)
DNA ligase
P3F56_06960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P3F56_06960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
zf-IS66
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WGT66973
LinkDB
All DBs
Position
2106957..2108981
Genome browser
AA seq
674 aa
AA seq
DB search
MVTPEIQQRVAKLREKLQKANYAYYVLGHSIIEDSIYDQLYRELQNIESQHPSLITPDSP
TQRVGDKPTSQFISVPHNIPLYSLENAFNLDELKKWQERWQSYSEVRNNENIDYVCELKI
DGVALALTYKNGLLIKGVTRGDGKTGEDITQNVRTIRSVPLKLALHDSSTIVEVRGEVFL
PLDEFERLNLERGEVKENPFANPRNAVAGTLRQLDPNVVSQRRLKFFAYTLHLPQNNPLN
NQWESLEWLKNQGFLVNPHHQLCPSLETVVNYFRHWETARHYLPYMTDGVVVKLNNFRLQ
KQLGFTEKFPRWAIALKYPAEEALTMVKDIVVNVGRTGAVTPMAIMEPVHLGGTIVQRAT
LHNRDRLAELNICVGDTVIIRKAGEIIPEVLRVLPELRSPHSQSYEMPSHCPECGSMLVR
PLGEAVTRCIHISCPAILRGSLVHWASRDALDIRGLGKKIIILLVNNGLVKSIADLYYLT
PENTTILDRIGLKSACNLVTAIDNSKKQPWARVLYGLGIRHVGYVTAKLLANNFHTAEQL
SQASVASLSSVYGVGKEIAKSIYDWFNIPENLILIKRLKDVGIQLQTSYDPTIKIASTRK
KVLDKIFVITGKLPTLTRSKAKDLIEKEGGKVTGSVSRKTDYLVAGENGGLKLKKAQILG
VSLLTEKELLKLLE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtggtaacgccagaaatacaacagagagttgcgaaattacgagaaaagctacaaaaagct
aattatgcttattatgtcctcggtcactccattatagaagactcgatttacgatcaactc
tatcgagaattacaaaatattgaaagtcaacatccgtcattaattacccccgatagtcct
acccaacgagtgggagataaaccgacttctcaatttatatctgttccccataacatccct
ctttatagtctagaaaatgcttttaacctcgatgaattaaaaaaatggcaagaacgctgg
caaagttattctgaagtcagaaataatgaaaatatcgactatgtttgcgaattaaaaatt
gatggagtagcgttagctttaacctataaaaatggattgctaattaaaggtgttaccaga
ggtgatggaaaaacaggagaggatattacccaaaatgtgcggactattcggtctgttcca
ctaaaattagctttacatgattcttctactatagttgaagttcgtggcgaagttttttta
cccctggatgaatttgagcgcctaaatctggagcgaggagaagtaaaagaaaatcccttc
gctaacccccgtaatgctgtcgccggaacccttagacagttagatccaaacgtagtgagt
caacgacggttaaaattttttgcttatactttacatttgcctcaaaacaatccgttaaat
aaccaatgggaatccttagaatggttaaaaaatcaggggtttttagttaaccctcatcac
caattatgcccctctttagaaaccgttgttaattactttcgtcattgggaaaccgccaga
cactacttaccctatatgactgacggggtggtggtcaaattgaataattttagactacaa
aaacaattgggatttaccgaaaaattccccagatgggcaatcgccctcaaatatcccgcc
gaagaagccctcactatggttaaggacattgttgttaatgtaggaaggacaggggctgtt
acccctatggcaattatggagcccgtccatttgggaggaaccattgttcaacgcgcaacg
ttacataatcgcgatcgcctagctgagttgaatatttgtgtgggggatacggtgattatt
cgtaaagcaggagaaattattcctgaagtcctacgagttttaccagaattacgctccccc
catagccaatcctatgaaatgcctagccattgtcctgaatgtggttcaatgttagtccgt
cctttgggagaagcggtgacacggtgtattcatatttcctgtccagctattttacggggt
agtttagttcactgggcttcccgtgatgccttagatattcgggggttaggaaaaaaaatt
atcattttattagttaataatggattagttaaatctattgctgacttgtattatttaaca
cctgaaaatacaactattttagaccgcataggtctaaaatctgcttgtaacttagttacc
gctattgacaatagtaaaaagcaaccttgggcacgagttctttatgggttgggcatccgc
catgtgggttatgttacggctaaattattagctaataatttccatactgcggaacaatta
tcccaagcatcagtagcgtctttaagttcagtttatggagtaggaaaagaaatcgctaaa
tctatttatgattggtttaatattcctgaaaacttaattttaattaaacggttaaaagac
gtaggaatacagttacaaacttcttatgatccaacaataaaaatagcatcaacacgaaaa
aaagttttagacaaaatttttgttataactgggaagttaccaactttaacacggagtaaa
gcaaaggatttgattgagaaagaaggagggaaagtaacaggttcagtaagtcgtaagact
gattacttagttgctggagaaaacggaggattaaaactaaagaaagctcaaattctagga
gttagtttattaactgaaaaagaattattaaaattacttgagtaa
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