Corynebacterium efficiens: CE1339
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Entry
CE1339 CDS
T00103
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cef
Corynebacterium efficiens
Pathway
cef03030
DNA replication
cef03410
Base excision repair
cef03420
Nucleotide excision repair
cef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CE1339
03410 Base excision repair
CE1339
03420 Nucleotide excision repair
CE1339
03430 Mismatch repair
CE1339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cef03032
]
CE1339
03400 DNA repair and recombination proteins [BR:
cef03400
]
CE1339
Enzymes [BR:
cef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CE1339
DNA replication proteins [BR:
cef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CE1339
DNA repair and recombination proteins [BR:
cef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CE1339
NER (nucleotide excision repair)
GGR (global genome repair) factors
CE1339
MMR (mismatch excision repair)
DNA ligase
CE1339
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CE1339
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAC18148
UniProt:
Q8FPZ7
LinkDB
All DBs
Position
1405123..1407939
Genome browser
AA seq
938 aa
AA seq
DB search
MSLAGLHRPGGVHCGAVPALALKIVPETDLLLVISHRLHLHEFLPAHGGQFGPDAGLLPG
DAGSGQSVGGGFVGVAQLHLIMGAQISQGALALPVGILDPVDGVGIIDQSIDGEVTGETP
QHGQIIGSVIHDEGLIISPALLDSPDGLSQHLLMGLAMLPGVFRGDAMHRGGTLGDLHPG
VGEQFEWGGSGIGDSHHRGGDDAGFKGVGGGGFQVEGEHVCGVEVGGEFHRGIHGFNPNQ
RPGHRVPPPDAIRDHLESGTVTDDNAQLRRTWNELAEKVRYHRDLYYNQQPEIPDADFDA
LFRQLQDLEEQHPELAVPDSPTKEVGAPVTEQSSFDNVEHLERMLSLDNVFDEEELRDWL
ARTPAKRYLTELKIDGLSIDLVYRNGMLERAATRGDGRVGEDITANARVIGDIPHELTAT
EEYPIPAVLEVRGEVFIPIEDFADVNAQRIEDGGKPFANPRNAAAGSLRQKNPEDVKKRR
LRMITHGIGYSEGFQPASQHDAYLALAAWGLPTSSYTEAVETADAVVDKVLYWADHRHDA
LHEMDGLVIKVDDIASQRALGSTSRAPRWAIAYKYPPEEVTTKLIDIKVSVGRTGRVTPF
AMMEPVFVAGSTVSMATLHNQSEVKRKGVLIGDTVVVRKAGEVIPEVLGPVVELRDGTER
EFVFPEHCPECGSTLAPTRAEDADWRCPNTRSCPGQLSQRLTYIAGRGAFDIEALGEKGA
QDLIRNGILVDEAGLFDLTEEDLLESDVYTTKAGAVNASGRKLLANLEQRKNTDLWRVLV
ALSIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDGVGMIIAQSFKDWFEVDWHRAIV
DTWAAAGVTMEDAETEQLEQTLEGLTIVVTGGLEGFTRDSVKEAIISRGGKASGSVSKKT
DYVVVGENAGSKATKAEELGLTILDEEAFVRLLDTGAV
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
ttgtccctagctggactgcaccggccaggaggtgttcactgtggagccgtccctgccctg
gccctgaagatagttccggaaactgatctgcttctcgtaatatcccaccgcctgcatctc
catgagttcctccccgctcatggtggccagttcgggccagatgcgggcctgcttccaggc
gatgcgggcagcggccagagcgtcggaggtggcttcgtgggcgttgcccaactgcacctc
ataatgggcgcacagatcagccagggtgcgcttgcccttccggtagggatccttgatcct
gtcgacggtgtagggatcatagaccagtccatcgatggtgaagtcaccggagagacgccg
cagcacggtcagatcatagggagcgttatacacgatgagggcttgattatttccccagcc
ctcctggattctccggatggtctcagccagcacctcctcatggggctggccatgctcccg
ggcgtattccgtggtgatgccatgcaccgcggtggcaccctcggggatctccaccccggg
gtcggcgagcagttcgagtggggtggctccggcattggtgatagtcaccatcgcggaggt
gacgatgcgggcttcaaaggggttggcggcggtggtttccaggtcgaaggagagcatgtt
tgcggggtcgaagtgggcggggagtttcaccgtggaattcatggcttcaaccctaaccaa
cgccccggacaccgggtgcccccgcccgacgcaatccgtgaccatctagaatcgggaacc
gtgactgacgataatgcccaactgcgcagaacctggaatgagctggcggaaaaggtccgg
taccaccgggatctctactacaaccagcaaccggagatccccgatgccgacttcgatgcc
ctgttccggcaactccaggatctggaggaacagcacccggagctcgccgtcccggacagt
cccaccaaggaggtgggcgcaccggtcaccgaacagtccagcttcgacaatgtcgagcac
ctggagcgcatgctcagcctggacaatgtcttcgatgaggaggaactgcgggactggctc
gcccgcaccccggcgaaacgttatctcaccgagttgaagatcgacgggctctccattgac
ctggtctaccgcaacggcatgctggagcgcgccgccacgcgtggcgacggccgggtgggc
gaggacatcaccgccaatgcccgcgtgatcggggacattccacatgagctgaccgccact
gaggagtaccccatccccgccgtgctcgaggtccgcggtgaggtgttcatccccatcgag
gacttcgccgatgtcaacgcccagcgcatcgaggacggcggcaaaccgtttgccaatccc
cgcaatgccgccgccggttcactgcgtcagaagaaccccgaggacgtgaagaagcgccga
ctgcgcatgatcacccacggcatcggttacagcgagggtttccagccggcctcccagcat
gatgcgtacctggcactcgccgcctggggcctgcccacgtcctcctacacggaggccgtc
gagaccgccgacgccgtcgtcgacaaggttttgtactgggccgaccaccggcatgacgcc
ctgcacgagatggacgggctggtgatcaaggtcgatgacatcgcctcccagcgtgcgctg
ggctccaccagccgtgcgccacgttgggcgatcgcctacaagtacccgcccgaggaggtc
accaccaagctgatcgacatcaaggtcagcgtcgggcgtaccggccgggtgactccattc
gccatgatggaacccgtctttgtggccggatccaccgtgtccatggccaccctgcacaat
cagagcgaggtcaagcgcaagggcgtgctcatcggtgacacggtcgtggtccgcaaggcc
ggtgaggtgatccccgaggtgctcggccccgtggtggagctgcgtgacggcacggaacgg
gaattcgtcttcccggagcactgcccggaatgcggatccacgctggccccgacgagggct
gaggatgctgactggcgttgccccaacacccgcagttgtcccggccagctgtcccagcgg
ctgacctatatcgcgggccgcggtgccttcgatatcgaggcgctcggtgagaagggtgcg
caggatctcatccgcaacggcatcctcgtcgatgaggcggggctcttcgacctcaccgag
gaggatctgctcgaatccgatgtctacaccaccaaggcgggcgctgtgaacgcatcgggg
cgcaaactgctcgccaacctggaacaacgcaagaacaccgacctgtggcgcgttcttgtc
gcactctcgatcagacatgtcggcccgacggccgcccgcgccctcgccggtcgctaccgg
tccatgcagaagcttgtcgacgcccccgtggacgaactcgccgaaaccgacggggtgggc
atgatcatcgcccagtccttcaaggactggttcgaggtggactggcaccgcgccatcgtg
gacacctgggcggcagccggggtgaccatggaggatgcagagaccgaacagctcgagcag
accctggaggggctcaccatcgtggtcaccggtggcctggagggtttcacccgcgactcg
gtgaaggaggccatcatctcccgtggtggcaaggcatcagggtcggtatcaaagaagacg
gattatgtggtggtgggggagaacgccggttccaaggccaccaaggcggaggaactcggg
ttgaccattctcgatgaggaggccttcgtccggcttctcgataccggcgcggtttag
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