Corynebacterium epidermidicanis: CEPID_05285
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Entry
CEPID_05285 CDS
T03955
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cei
Corynebacterium epidermidicanis
Pathway
cei03030
DNA replication
cei03410
Base excision repair
cei03420
Nucleotide excision repair
cei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CEPID_05285 (ligA)
03410 Base excision repair
CEPID_05285 (ligA)
03420 Nucleotide excision repair
CEPID_05285 (ligA)
03430 Mismatch repair
CEPID_05285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cei03032
]
CEPID_05285 (ligA)
03400 DNA repair and recombination proteins [BR:
cei03400
]
CEPID_05285 (ligA)
Enzymes [BR:
cei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CEPID_05285 (ligA)
DNA replication proteins [BR:
cei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CEPID_05285 (ligA)
DNA repair and recombination proteins [BR:
cei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CEPID_05285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEPID_05285 (ligA)
MMR (mismatch excision repair)
DNA ligase
CEPID_05285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CEPID_05285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DUF6782
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKK02926
UniProt:
A0A0G3GNW9
LinkDB
All DBs
Position
1087399..1089465
Genome browser
AA seq
688 aa
AA seq
DB search
MALDWANVTDNVELRRTWDRLAEEIRYHRDRYYNETPEISDAEFDALFQKLVKLEEDHPE
LAVPDSPTMQVGAPVAAESSFANVEHLERMMSLDNVFDLDELRSWLNRTPAERYLTELKI
DGLSIDLIYRNGQLERAATRGDGRVGEDVTENAKVIEDIPHQITGTDEYPVPELLEVRGE
VFIAVEDFSAVNEQRQLDGGKPFANPRNAAAGSLRQKNTADVRKRKLRMICHGLGALEGF
TPASQYDAYRALKAWGLPTSAYTEAVTTAEEVVAKVEYWADHRHDALHEMDGLVIKVDDR
ASQRALGATARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVFVAGSTVS
MATLHNPSEVKRKGVLIGDTVVIRKAGEIIPEVLGPVVEKRDGTEREYHFPEHCPECGAT
LAPSKEGDADWRCPNTRSCPGQLGARLTYLAGRGAFDIEALGEKGAHDLIRSGVLADEAG
LFDLTEDDLTRTSVYTTKAGAVNASGKKLLSNLAQAKNTALWRVLVALSIRHVGPTAARA
LATRYRSIDAARAASVAEIAETEGVGEIIAASFKEWFEVDWHREIVDRWAAAGVTMAEDT
TDLPEQSLAGLTIVVTGTLENYSRDSAKEAIVTRGGKAAGSVSTKTDYVVVGENAGSKET
KARELGVPILNEAEFTQLLEHGPNDRTE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtggcactagactgggccaacgtgaccgacaatgttgaactgcgccgaacttgggaccgc
ctcgccgaagagattcgctaccaccgcgatcgctattacaacgaaacccctgagatttcc
gatgccgaattcgatgccctgttccagaagttagtaaagctcgaagaagatcaccccgag
ctcgccgtgccagattcgcccacaatgcaagtcggggctcccgtagctgccgagtcgagc
ttcgccaacgtcgaacatctcgaacgcatgatgagcctcgacaacgtctttgacctcgac
gaattgcgcagctggctcaaccgaacccccgccgaacgctacctcaccgagctcaaaatc
gatgggctatccatcgacctgatctatcgaaacggccagcttgagcgcgccgccacgcgc
ggtgacggtcgcgttggcgaggatgtgaccgaaaacgccaaggtgatcgaagacatcccg
caccagatcaccggcaccgatgaataccccgtcccggagctcctcgaagtgcgcggcgaa
gtgttcatcgcagttgaagacttttccgcagtaaacgaacaacgccaactcgacggcgga
aaaccgttcgccaacccacgtaacgccgccgccggctcattacggcaaaagaacactgcc
gacgtgaggaaacgaaaactgcgcatgatctgccacggcctgggcgcactggaaggattc
acaccggcctcgcagtacgatgcctaccgtgcgctcaaagcgtggggcctgcccacctcg
gcatacaccgaagccgtcaccacggccgaagaagtggtggctaaggtggagtactgggca
gatcatcgccacgacgccctccatgagatggacgggctcgtcatcaaggtggacgatcgc
gcctcccagcgcgccctcggagccacggcccgggccccgcgctgggccatcgcctacaag
tacccgcccgaggaagtcaccaccaaactgctcgacatccaagttggtgtcggccgcacc
ggccgcgtaacccccttcgcggtgatggagcccgtattcgtcgcaggttccacggtgtcg
atggccaccctgcacaaccccagcgaagtcaaacgcaagggcgtgctcatcggagataca
gtggttatccgaaaagcaggggagatcatcccagaggtgttggggccggtcgtcgaaaag
cgcgatggcaccgagcgggaatatcacttcccggagcactgcccggaatgtggcgcgacg
ttggcgcccagcaaggaaggcgacgctgactggcgatgcccgaacacgcggtcctgcccg
ggccagcttggggcgcgactgacctatttggcaggtcgtggcgcgtttgatatcgaagcg
ctcggcgaaaagggcgcacacgacctcattcgcagcggggtcctcgccgacgaggccggg
ctcttcgacctcaccgaggacgacctcacacgcaccagcgtctacaccaccaaagccggg
gccgtcaatgcctcggggaagaagctgctgagcaacctggcacaggccaaaaacacagca
ctgtggcgggtgctggtcgcgctttcgatccggcatgtcggacccaccgctgcgcgagcc
ttagcgacgcgctatcgctccattgacgcggcgcgcgcggctagcgtggcggagatcgca
gaaaccgaaggcgttggtgaaatcatcgccgcgagcttcaaagaatggtttgaggtggat
tggcatcgagagatcgtcgatcgctgggccgccgcaggcgtgacgatggccgaagacacc
actgatcttccggaacagtccttagctgggctgaccatcgtggtcacgggcacgctggaa
aactactcccgggactccgcgaaggaagccatcgtgacgcgcggtggcaaagcagccggg
tcggtgtccacgaagaccgactatgtggtcgttggcgaaaacgccggatctaaggaaacc
aaggcccgcgagctgggggttccgattctcaacgaggccgagttcacacaactactggag
catggacccaacgatcgtacagagtga
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