Caenorhabditis elegans (nematode): CELE_F41G3.12
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Entry
CELE_F41G3.12 CDS
T00019
Symbol
agr-1
Name
(RefSeq) Agrin
KO
K06254
agrin
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04512
ECM-receptor interaction
cel04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
CELE_F41G3.12 (agr-1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
CELE_F41G3.12 (agr-1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cel00535
]
CELE_F41G3.12 (agr-1)
Proteoglycans [BR:
cel00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
CELE_F41G3.12 (agr-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kazal_2
Laminin_G_2
Kazal_1
Laminin_G_1
Kazal_CFAI
EGF_laminin
Laminin_G_3
EB
PGDH_inter
Motif
Other DBs
NCBI-GeneID:
3565243
NCBI-ProteinID:
NP_001022152
WormBase:
WBGene00018304
Ensembl:
WBGene00018304
UniProt:
G5EG68
LinkDB
All DBs
Position
II:complement(6760674..6775176)
Genome browser
AA seq
1473 aa
AA seq
DB search
MRLHNYFVSIFLFSCIVWTVFSSCLKPRPTRSYIHSLFENSDVIIAGVITGISYRVDSLY
IENITVIPRRIYKGREYVEENKNIVIGNILETEPCAHRLLASDVRIFSLTNQQGVFLLDA
PMIRVSLPIFDALFTISNKQAHRKRRRTKQAICEQSLCPFGSKCGLKTGVCECKARCRVV
TDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPCKKRNPCEDLRCGPGEDCVVN
QINGILLAKCVCPTQCPNYGDSVESSPVCSSHGVDYQSSCHLRHHACESKTNITVKFFGR
CDPCHGHKCPNGQTCQLGVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQ
KDILVWKRGNCDEAGSPCEKMECGFWGSCVVKPDRTAECECPNRCEDVMRPVCATNGETF
DNECEMKKKSCETKSMIKVKHQGTCGIGVCATFDSCKKPQVCVVVDGKPKCVCPSCTDEF
KEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVGENEKA
ECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDECLHVQC
RYGEECRSGVCVCSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKGAPISEMPPSHC
HSSKTSFPDSCQCNRVGSFGHTCDETGQCKCRPGVAGIKCDHCLPSFWGIHLIAQGALSC
RPCGCSAFGSSRSDCEQTTGKCECKNGALGDKCDLCPNGSMMTAGGCVSPAVYKTPRDCH
SLRCFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKH
QIDVVPVSMGICDDENFEVLDRLQREKNSNEKRLGSPCTRHEECEKLSAQCITRPGRKSV
CDCDDGWKSHLGICIEISKKRKSDQLELTTDINSDWYFSRKDINRFSKLSMHIHLKEKRE
GILIRMVTEDKKDLQISHENRRIVIKVGKARVDSLQTIAYNVSLELKWKRNEVHFKLNGE
VQKYTFEDVLDSSVKRIYVGTDGKWPRNRLNSIVGYLEIDDEPVRIDEIKPFYMAPEISR
TLKFKENGFVQFENLQIDVRERTRVEIVFKPYRTNGILFYWSVPSDPHTDFIAFAMIDAK
PHFVYELGSGLSYIRGEPIPLNSWHTVRIERLAKDVSMFVNETLVKKHTSQSKNAHLDIS
KKDALYVGFVPEGIISHKVRKLNVPFEGELQELRINELPINLISGVSKEVMDKVDVMEIN
EKEISKCDGASFDRKGSVVCRQHENDARGIHINEQDALVFPNNVTFSVGSSKSSNFSFDF
RTLKQFGVIWQEGAWSQADEGGDFLLVFIEEGKLYVGVNLGADVHLKPISTNVTVADNHW
HSVSFRRKERKCELWVDSKKILHVVASPGDVNLDSNGLVYLGGANPKKHKLLKSLNLSNK
FVGCVKNLKIFGAEVNLLVDSLKSIETPKYCYN
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgagacttcacaattatttcgtttccatatttctgttttcctgtattgtatggacagtt
ttctcaagctgcttgaaacctcgtccaactcgttcctatattcatagtttatttgaaaat
tctgatgttattattgctggtgttataactggaatttcatacagagttgattcattgtat
attgagaacattacagtaatcccccgaagaatctacaaaggtagagaatatgtggaagag
aataagaacattgttatagggaacattctagaaacagagccatgtgctcatcgtcttcta
gcttcggacgtaaggatcttctcgctcacaaatcaacagggagtatttcttctagatgct
ccgatgataagggtcagcttaccgattttcgatgctttattcacaatttcaaataagcaa
gctcaccggaaacgaagaagaacgaaacaagcaatttgtgagcaatctctgtgccccttt
ggttcaaaatgtggactgaaaaccggagtatgcgaatgtaaagcaagatgtcgagttgta
actgatgttgtatgtggatctgatcatgtttcatactcttcattctgtcatttatctgtt
cgaagttgtgttcttgctaagaacggagttcgccttcgtgttgctacaaaaggaccttgt
aaaaaacgaaatccatgtgaagatctgagatgtggtccaggagaagattgtgttgtgaat
caaatcaatggaattcttcttgccaaatgcgtctgtcccactcaatgtcccaattatggt
gactcagttgaatcgtcacctgtatgctcatctcatggtgtcgattaccagtcttcgtgt
catttgagacatcatgcttgtgaatcaaagacaaacatcacagtcaagttttttggtaga
tgtgatccatgtcatggccacaaatgtccaaatggtcaaacttgccaattaggagttgat
agaagaccagagtgtaaatgtagtgaacaatgtacaatgaatagtgctcatgtctgtgga
acagatggaaaaacatatcttaatgaatgcttcttaaaattagctgcctgcaaggaacaa
aaggatatactcgtctggaaaagaggaaactgtgatgaagctggaagtccctgtgagaaa
atggaatgtggattctggggaagttgtgttgtaaagccggatagaactgccgaatgcgaa
tgccctaatagatgtgaagacgtgatgagacctgtttgtgcaacgaacggagagactttt
gataatgaatgtgaaatgaaaaagaaaagctgcgaaacaaaatcaatgatcaaagtgaaa
catcaaggaacttgtggaattggagtttgtgcaacatttgattcttgtaagaaaccccaa
gtttgtgttgtggtcgacggaaaacccaaatgtgtatgcccatcatgtactgatgaattt
aaggaagtttgtggaagtgatggtaaaacatactcaaatgaatgtagactacaaaatgct
gcctgtatggcacagaaaaatatattcgtgaaatacaattccgcatgtgaagcatgcaaa
ctcaaaaaagaaaaatgcgatttttattcggcttgcgtagttggagaaaatgaaaaagca
gaatgcaaatgcccagatgattgtccatcatatgaaatggaagaaggaaaagaagtttgt
ggaactgatggagttacttactcatctgaatgtcatatgaagaaatctgcttgccatcag
agcaagtttgtcatgactgcgtttgaaggaaaatgtgacgaatgcctgcatgtacaatgt
cgatatggagaagagtgtcgaagtggtgtatgtgtatgttcgtacaattgtccagcaaat
ccaccattatctgctagaatctgtggagagaatggggtactttatccatcactctgtcat
cttcaattggcatcttgccagaaaggtgctccaatatctgaaatgcctccatctcattgt
cattcatcgaaaacatcattcccagattcttgtcaatgcaaccgtgtcgggtcgtttggc
catacttgtgatgaaactggacaatgtaagtgtcgaccaggagttgctggaatcaaatgt
gatcactgcttaccatctttctggggaattcatcttattgctcagggagcattatcatgc
agaccttgcggatgtagtgcgtttggatcatcccgttcagattgtgagcagacaactggg
aaatgtgaatgtaaaaatggtgcgctaggggataaatgtgatctttgccccaatggatca
atgatgactgcgggaggttgcgtgtcgccagctgtttataaaacaccaagagattgccac
tctcttcgctgcttccatggtgcaaaatgtgttccttctccatcaagtttccctgattgt
atctgtccacagtcatgtaatatgaatcatcttggaattgttgctaatatgacagtttgt
ggatccgatggaacaacgtactcgaatctttgcgaacttaaaatgtttgcatgcaaacat
caaattgacgttgttccagtttcaatgggaatttgtgatgatgaaaacttcgaagtactc
gatcgtctccagagagagaaaaattccaacgaaaaacgactaggatctccatgtacacgt
cacgaggaatgtgaaaagctttctgcgcaatgtataactcgaccggggagaaaatcagta
tgtgattgtgatgatggctggaaaagtcatctgggaatttgtatagaaatttcaaagaaa
agaaaatccgatcaactcgaattaacaactgatatcaactctgattggtatttttcaagg
aaagatattaatcgcttttcgaaactttcgatgcatattcatcttaaagaaaaacgggaa
ggaatcttgatccgaatggtaactgaagacaaaaaagatctacaaatcagtcatgaaaac
cggcggatagtgataaaagttggcaaagcacgagttgactccctgcaaacaattgcatac
aacgttagcttagagttaaaatggaagcgaaacgaagtccatttcaaattgaatggagaa
gttcaaaagtatacatttgaagacgtccttgattcctctgtgaagcgaatttatgttgga
acggacggaaaatggccaagaaatcgactgaattcaatagttggttatttggaaattgat
gatgaacctgttagaatagatgaaataaaaccattttatatggcgcctgaaatttcaaga
acattgaagtttaaagaaaacggatttgtacaattcgaaaatttacaaatagatgttcga
gagaggacccgcgttgaaattgtcttcaaaccatacagaacaaatggtattctattctat
tggtctgttccttctgatccacacactgattttattgcatttgcaatgattgacgcgaaa
cctcatttcgtttatgagcttggatccggcttatcctacattcgaggagaaccaatcccg
ttgaactcttggcatactgtgagaatcgagagattggcaaaagatgtgtcaatgtttgtg
aatgaaacacttgtgaagaagcacacatctcaaagcaaaaatgctcatttggatatttca
aagaaagatgctctttatgttggatttgttccggaaggaattatatcacataaagtccgg
aaattaaatgttccatttgaaggagagttgcaagaactgagaattaatgaacttccaatc
aatttgatatctggtgtctcgaaggaagtgatggataaggttgacgtcatggaaatcaac
gagaaggaaatatcaaaatgtgatggtgccagttttgacagaaaaggatcggttgtttgt
agacaacatgagaatgatgctcgaggaattcacatcaacgagcaagatgctctcgttttt
ccaaacaatgtcactttctctgttggttcgtccaagagttcaaatttttcattcgacttc
cgcaccttaaaacaatttggcgttatatggcaagaaggagcatggagtcaggctgatgaa
gggggagattttctattagtgttcattgaagaaggaaagttgtatgttggagtgaatctt
ggagctgatgttcatttgaaaccaatatcaacaaatgtcactgttgctgataatcattgg
cattctgtttcgtttagaagaaaagaacgaaaatgtgagctgtgggtggattcgaagaag
atccttcacgtcgtcgcttcaccaggagacgtgaatctcgattctaatggacttgtatat
cttggaggagccaatccgaagaaacataaacttctgaaatctttgaatctttctaacaag
tttgtgggatgtgtcaagaatctgaaaatattcggagcagaagtcaatttgctcgtcgat
tctttgaaatcaatagagacacccaagtactgctataactaa
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