Cellvibrio sp. PSBB006: CBR65_04280
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Entry
CBR65_04280 CDS
T04891
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cell
Cellvibrio sp. PSBB006
Pathway
cell03030
DNA replication
cell03410
Base excision repair
cell03420
Nucleotide excision repair
cell03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cell00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBR65_04280 (ligA)
03410 Base excision repair
CBR65_04280 (ligA)
03420 Nucleotide excision repair
CBR65_04280 (ligA)
03430 Mismatch repair
CBR65_04280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cell03032
]
CBR65_04280 (ligA)
03400 DNA repair and recombination proteins [BR:
cell03400
]
CBR65_04280 (ligA)
Enzymes [BR:
cell01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBR65_04280 (ligA)
DNA replication proteins [BR:
cell03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBR65_04280 (ligA)
DNA repair and recombination proteins [BR:
cell03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBR65_04280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBR65_04280 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBR65_04280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBR65_04280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
POLH-Rev1_HhH
RNA_pol_A_CTD
DZR_2
MRB1590_C
Zn_ribbon_NUD
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
ARU26710
UniProt:
A0A1Y0FTF9
LinkDB
All DBs
Position
complement(1041608..1043659)
Genome browser
AA seq
683 aa
AA seq
DB search
MSTPAPNIVTEAEQLRAEIHDHNYRYYALDEPQVPDAEYDRLMLRLREIESQYPQLITPD
SPTQRVGAAPLSAFATVQHEMPMLSLDNAFSDEELINFNRRIQERLKHTDHIEFACEVKL
DGIAVSLLYRDGILVRGATRGDGARGEDITQNVRTIDSIPLRLRGTGFPSVLEVRGEIYM
PKSGFEKMNNQAREKGEKLFVNPRNAAAGSLRQLDPRITASRPLEMCAYSVGLVDGVPAE
HPWPTRHSDILYALRDWGFLINREMVVAKDIDECIAYYRKIQDKRMSLTYDIDGIVFKVN
QRELQEKLGFISRAPRWAIAYKFPAQEEMTQLLDVEFQVGRTGAVTPVARLQPVFVGGVT
VSNATLHNRDEIQRLGLKIGDTVIVRRAGDVIPQIVGIVDTKRPENARDVVFPDHCPVCG
SPVETVPGEAVARCDGGLICPAQRKEAIKHFASRKAMDVEGLGDKLVEQLVDQGYIKAVA
DLYQLTREQLAGLERMGEKSADNLLNALEKSKQTTLEKFIYALGIREVGEATARNLALHF
GNYAALSNATEDALQEVADVGPVVAHFVAEFFQQEHNREAVTALKAAGVTWEDRDQPVNT
ADLPLKGLTYVLTGTLEAMSRDDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLQKAE
ELNIPVLDEAGLLALLQQHQRAV
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacccgctcccaatattgtcactgaagccgagcaattgcgcgcagagattcac
gaccacaattatcgctactacgcccttgatgagccgcaagtgccggatgcggaatatgac
cgcctgatgctgcgcctgcgtgaaatcgaaagccaatacccacaactgattacgccagat
tcacccacacaacgggttggggcggcgccactcagtgccttcgcgactgtacagcatgaa
atgcccatgttgtctctcgataacgcgttcagtgatgaagaactcatcaactttaatcgc
cggattcaggagcggttaaagcataccgatcacatcgaatttgcctgtgaagtcaagctg
gatggcattgccgtcagcctgttgtatcgcgatggcatcctcgtgcgcggcgcaacgcgc
ggcgatggcgcacgcggcgaagacattacccagaatgtgcgtacgattgattccattccg
ctacggttacgcggcacaggttttccttcagtactggaagtgcgcggcgagatttacatg
cccaaatccggttttgaaaaaatgaacaaccaggcgcgggagaaaggtgaaaaacttttt
gtgaatccgcgcaatgccgcagcgggaagcctgcgtcaattggacccgcgtattacggca
tcccgcccgctggaaatgtgtgcctacagcgtcggacttgtcgacggcgtgccggctgaa
catccctggccaacccgccacagcgatattctttatgcgttacgcgactggggtttcctg
atcaaccgtgaaatggtcgtggcaaaagatatcgatgaatgtattgcgtattaccgcaag
attcaggataaacgcatgtcgttgacctacgacattgacggtattgtctttaaagttaat
cagcgtgagctgcaagaaaaattaggttttatctcccgcgcgccgcgctgggccattgcc
tataaatttcctgcccaggaagaaatgacccagttgcttgatgtggaattccaggtaggg
cgcaccggggcagtgacacctgtagcccgcttgcaacccgtgtttgtcggtggcgtaacc
gtatccaatgcgaccttgcacaatcgtgatgagatccagcgactgggtttgaagatcggt
gatacggtgattgtgcgccgtgccggtgatgtgattccgcaaatcgtcggtattgtcgac
accaaacgtcccgaaaacgcgcgcgacgttgtctttccagaccattgcccggtgtgtggc
tcgccggttgaaacggtgcctggcgaagctgtggctcgttgtgatggtggtttgatttgt
ccggcacaacgcaaagaagcgatcaagcattttgcttcgcgcaaagccatggatgtcgaa
gggctgggcgacaaactggtcgagcaattggtggatcagggctatatcaaagcggttgcg
gacctgtatcagctgacgcgcgagcaactcgctggcctggagcggatgggtgaaaaatca
gccgataatttattaaatgcattggaaaaaagtaagcaaaccacgctggaaaaatttatc
tatgcgttgggcattcgtgaagtcggtgaagcaaccgcacgtaatctcgcgttacatttt
ggcaactacgctgctttatcaaatgccacggaagatgctctgcaagaagtggcggatgtc
ggcccggtggttgctcattttgtggcagaatttttccagcaggaacacaaccgtgaggcc
gttactgctctaaaagcggcgggtgtaacctgggaagatcgcgatcagccggtgaatacc
gctgatttgccactgaaaggtttaacctacgtattgaccggtaccttggaagccatgagt
cgcgatgatgcaaaggcacatctgttggcattgggagccaaggtcgcgggcagcgtatcg
gcgaaaacagattacgtggtggcggggcccggcgctggctccaaattgcaaaaagcagaa
gaattgaatatcccggtactggacgaggcgggtttactcgccctattacaacaacaccaa
cgggcggtctga
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