Cellulomonas shaoxiangyii: E5225_12355
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Entry
E5225_12355 CDS
T05988
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
celz
Cellulomonas shaoxiangyii
Pathway
celz03030
DNA replication
celz03410
Base excision repair
celz03420
Nucleotide excision repair
celz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
celz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5225_12355 (ligA)
03410 Base excision repair
E5225_12355 (ligA)
03420 Nucleotide excision repair
E5225_12355 (ligA)
03430 Mismatch repair
E5225_12355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
celz03032
]
E5225_12355 (ligA)
03400 DNA repair and recombination proteins [BR:
celz03400
]
E5225_12355 (ligA)
Enzymes [BR:
celz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E5225_12355 (ligA)
DNA replication proteins [BR:
celz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E5225_12355 (ligA)
DNA repair and recombination proteins [BR:
celz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E5225_12355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E5225_12355 (ligA)
MMR (mismatch excision repair)
DNA ligase
E5225_12355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E5225_12355 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QCB95387
UniProt:
A0A4P7SP78
LinkDB
All DBs
Position
complement(2720514..2722862)
Genome browser
AA seq
782 aa
AA seq
DB search
MTGAEPAAAPAPAAPAPASPEARRRWTELAASLEADQFAYYVQDAPASSDADYDARMREL
AALEDAHPDLRTPGSPTQRVGGTFSTEFAAVDHVERMLSLDNVFSAEELAAWADRVVRDL
ETQDVHWLCEPKIDGLAIALLYERGRLVRAATRGDGRTGEDVTLNVRTIGTIPHVLAGDP
ATHPELIEVRGEVFFPVEAFEALNAAQVAAGKPPFANPRNAAAGSLRQKDPRVTASRRLR
MYAHGIGALRGGPEITRQSQVYALLAGWGVPVSPHTRVVDAFADVQAFVAHHGEHRHDVE
HEIDGVVVKVDERSAQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIEVGIGRTGRATPFG
VMEPVVVSGSTVRQATLHNQEVVAAKGVRVGDMVVLRKAGDVIPEIVGPAPAAPGDDVPR
VTWHMPADCPECGTPLRPMREGDIDLRCPNARTCPAQVRGRVEHIGSRGGLDVEALGEVT
AAALTQPEVPADPPVPNEAYLFDLVGYPLDAPADEVARVRGRSTALLAQVEVVVRDPETG
LPREDEDGRVRRRAPFRRTLKHTKAALAAAAAEGRTLPGWEPSESARTLLDQLDVAKTKD
LWRVLVSLSIRNVGPTAARALATRFGSMEALRAVVEGDPAQAVADLAQVEGIGPVIAESL
VQWFTGPEGDWHREVVDRWAAAGVRMRDERDEAPAPTLEGLTLVVTGSLEGFSRDGAKEA
IIARGGKASGSVSKKTDYVVVGENAGSKEAKALELGLRILDEAGFVALLAGGPAAVAEPA
DG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggagcggagcccgccgccgcgccggcgcccgccgcaccggcgcccgcctcaccc
gaggcccggcgccgctggaccgagctcgcggcgtcgctcgaggccgaccagttcgcgtac
tacgtgcaggacgcgccggcctcgtcggacgccgactacgacgcccgcatgcgcgagctg
gccgcgctcgaggacgcgcaccccgacctgcgcaccccggggtcgccgacgcagcgcgtg
ggcgggacgttctcgacggagttcgccgcggtcgaccacgtcgagcggatgctgtcgctg
gacaacgtcttctcggcggaggagctggccgcctgggcggaccgcgtcgtgcgggacctc
gagacgcaggacgtgcattggctgtgcgagccgaagatcgacggcctggcgatcgcgttg
ctgtacgagcgggggcggctggtgcgcgccgcgacgcgcggcgacggccgcacgggtgag
gacgtgacgctcaacgtccgcaccatcggcacgatcccgcacgtgctggcgggcgacccc
gccacgcacccggagctcatcgaggtccgcggcgaggtcttcttcccggtggaggcgttc
gaggcgctgaacgcggcccaggtcgccgccgggaagccgccgttcgccaacccccgcaac
gcggccgcgggctcgctgcggcagaaggacccgcgcgtgacggcgtcgcgccggctgcgg
atgtacgcgcacggcatcggcgcgctgcgcggcgggccggagatcacccggcagtcgcag
gtgtacgccctgctcgccggctggggcgtgcccgtgtcgccgcacacgcgcgtggtcgac
gcgttcgccgacgtgcaggcgttcgtcgcgcaccacggcgagcaccggcacgacgtcgag
cacgagatcgacggggtcgtcgtcaaggtcgacgagcgctccgcgcagcgccgcctgggc
gcgacgagccgggcgccgcggtgggccatcgcgtacaagtacccgccggaggaggtcaac
acccggctgctcgccatcgaggtgggcatcggccggaccgggcgggcgaccccgttcggc
gtcatggagcccgtcgtggtgtcggggtcgacggtccggcaggcgacgctccacaaccag
gaggtggtcgccgccaagggggtgcgggtcggcgacatggtcgtgctgcgcaaggcgggc
gacgtgatcccggagatcgtgggcccggcgcccgccgcgccgggtgacgacgtgccgcgc
gtcacctggcacatgccggcggactgccccgagtgcggcacgccgctgcggccgatgcgc
gagggggacatcgacctgcggtgcccgaacgcgcgcacgtgcccggcgcaggtgcgcggt
cgcgtcgagcacatcggctcgcgcggcggcctggacgtggaggcgctcggtgaggtcacc
gccgccgcgctgacgcagcccgaggtgcccgccgacccgcccgtgcccaacgaggcgtac
ctgttcgacctcgtcgggtacccgctcgacgcgcccgcggacgaggtcgcgcgcgtgcgc
gggcgcagcaccgcgctgctcgcccaggtcgaggtcgtcgtgcgcgaccccgagaccggg
ctgccgcgcgaggacgaggacgggcgcgtccggcggcgcgcccccttccggcgcacgctc
aagcacacgaaggccgccctggcggccgccgccgccgagggccgcacgctgccgggctgg
gagccgtcggagtcggcgcgcacgctgctcgaccagctcgacgtcgcgaagaccaaggac
ctgtggcgcgtgctcgtgtcgctgtcgatccgcaacgtcggcccgacggcggctcgcgcg
ctcgcgacgcggttcggctcgatggaggcgctgcgcgcggtcgtcgagggcgaccccgcg
caggccgtggcggacctggcgcaggtcgaggggatcggcccggtgatcgccgagtcgctc
gtgcagtggttcacgggcccggagggcgactggcaccgcgaggtcgtcgaccggtgggcc
gccgcgggcgtgcggatgcgcgacgagcgggacgaggcgccggcgcccacgctcgagggg
ctgacgctggtcgtcaccggctcgctcgagggcttcagccgcgacggcgccaaggaggcg
atcatcgcgcgcggtggcaaggcgtcgggcagcgtgtcgaagaagacggactacgtcgtc
gtcggggagaacgccgggtcgaaggaggcgaaggcgctcgagctgggcctgcgcatcctc
gacgaggcgggcttcgtggcgctcctggcgggagggcccgcggccgtcgccgagccggcg
gacggctga
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integrated database retrieval system
