Cedecea neteri M006: LH23_05500 Help Entry LH23_05500        CDS       T03328                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism cem  Cedecea neteri M006 Pathway cem03030   DNA replication cem03410   Base excision repair cem03420   Nucleotide excision repair cem03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cem00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     LH23_05500 (ligB)    03410 Base excision repair     LH23_05500 (ligB)    03420 Nucleotide excision repair     LH23_05500 (ligB)    03430 Mismatch repair     LH23_05500 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cem03032]     LH23_05500 (ligB)    03400 DNA repair and recombination proteins [BR:cem03400]     LH23_05500 (ligB) Enzymes [BR:cem01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      LH23_05500 (ligB) DNA replication proteins [BR:cem03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      LH23_05500 (ligB) DNA repair and recombination proteins [BR:cem03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      LH23_05500 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      LH23_05500 (ligB)    MMR (mismatch excision repair)     DNA ligase      LH23_05500 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       LH23_05500 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH RNA_ligase DUF3701 Xre-like-HTH Motif Other DBs NCBI-ProteinID:  AIR60133 UniProt:  A0AAN0S244 LinkDB All DBs Position 1160100..1161791 Genome browser AA seq 563 aa AA seqDB search MKGGVLAVFVILLGISSTVTASCPAWSDVRTQKEIERLTHQLSLWDDAYYQQGKSLVSDA VYDDLRETLSVWRRCIKQGQEAESARMGTAGNSSHPVAHTGLKKLPDKRAVELWAAGRQN LWVQPKVDGVAITLVYQQGRLVKMLSRGNGVKGEDWTYKAAGINAIPLHLAGPLANSVLQ GELFLKREGHIQSQAGGVNARSKVAGEMLRTGKVSDSNALGIFIWAWPDGPESLVEKGNI LRDAGFSLTALWSRPVANIDEIARLREGWFRQPLPFVTDGIVIRQEREPEAKFWQPGQGE WAIAWKYPPAEQIAVVRSVDFAVGRTGKVSVVLELEEVQLDDKRVRRVNIGSLKRWQEWD VVAGDKVKISLAGQGIPRMDEVVWRVSQRDTSIPEMVAFTPVTCLYASSECAEQFIARLT GMSQKRVLDLAGVSQSTWRHLHMTSRFQHIFSWLELNRMTLSGLPGISVKKAELLWHQFS LSRKQPFIRWVLALGMPLPRSAHAVLKDKHWQQLGGWDQSRWQTLPGVGAKRARQLVDFM KHPQVVALAAFLGQHNIPGFGHQ NT seq 1692 nt NT seq  +upstreamnt  +downstreamnt atgaaagggggcgtgttagcagtttttgtcattttactggggatttcatctacggtaacg gcatcgtgtccagcatggtctgatgtcagaacacagaaggagattgaacgccttacgcac cagctatctctttgggatgacgcctattaccagcagggtaagagtttggtgagcgatgcc gtttacgatgacttaagggagacactgtcagtctggcggcgctgcattaaacagggacaa gaggcagaatctgcaaggatgggaacagcaggaaactcgtcccatcccgttgcgcataca gggctgaaaaagttaccggataaacgcgcagtcgagctatgggctgcaggccgacagaac ttatgggtacagcccaaagtagatggggtggctattacattggtctatcagcaagggcgg ctggtgaaaatgctaagccgtggaaatggtgttaaaggagaggactggacatacaaagct gccggtattaatgccataccccttcatcttgccggacctcttgcgaacagcgtattgcaa ggcgagcttttcctgaaacgggagggccatattcaaagccaggccggaggcgtgaatgcg agatctaaagttgccggggaaatgcttcgcaccggcaaggttagcgattcaaacgcgctg ggcatttttatctgggcctggcctgatggccctgaaagccttgttgaaaaaggcaatata ttacgtgacgcaggattttctctgaccgctctatggtcccggcctgtagcaaacattgat gaaattgcccgtttgcgagaggggtggtttcgccagccacttccctttgtcacggatggc attgtgattcgtcaggaacgtgaacctgaggctaaattctggcagccggggcagggggag tgggccatcgcgtggaaatatcctcctgctgagcaaatcgcggtggttcgtagcgttgat tttgccgtgggacgaacgggtaaggtgtccgtcgtgcttgaattggaagaggttcagctc gacgataaacgtgttcgacgggtgaatatcggttcactaaaacgctggcaggaatgggat gttgtggccggtgataaagtaaaaataagtctggcgggacagggaatacctcgaatggac gaagtcgtctggcgcgtcagccagcgagacacatccataccggaaatggtggcttttaca ccggtgacttgcctttatgcttcgtctgaatgcgcagaacaatttattgcccgtctgacg gggatgagccaaaagcgagttctggatttggccggcgtgagtcaaagcacctggcggcat ctacacatgacgtcacgctttcagcacattttttcatggctggaactgaacagaatgacg ttgtctggtttaccgggaatttcagtgaaaaaagccgagctgttatggcatcagttttct ctgtcccgaaaacagccgtttattcgctgggtattagccttagggatgccactgccgcga agtgcgcatgccgttcttaaagacaaacactggcaacagcttggcggctgggatcagtcc cgatggcaaactttacccggagtgggggctaagcgggccaggcagttagtcgattttatg aagcatccacaggtagtcgcccttgccgccttccttggccagcataacatcccgggtttt ggtcatcagtga

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