Cedecea neteri ND14a: LH86_05435
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Entry
LH86_05435 CDS
T03337
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cen
Cedecea neteri ND14a
Pathway
cen03030
DNA replication
cen03410
Base excision repair
cen03420
Nucleotide excision repair
cen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH86_05435 (ligB)
03410 Base excision repair
LH86_05435 (ligB)
03420 Nucleotide excision repair
LH86_05435 (ligB)
03430 Mismatch repair
LH86_05435 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cen03032
]
LH86_05435 (ligB)
03400 DNA repair and recombination proteins [BR:
cen03400
]
LH86_05435 (ligB)
Enzymes [BR:
cen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH86_05435 (ligB)
DNA replication proteins [BR:
cen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH86_05435 (ligB)
DNA repair and recombination proteins [BR:
cen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH86_05435 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH86_05435 (ligB)
MMR (mismatch excision repair)
DNA ligase
LH86_05435 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH86_05435 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIR64547
LinkDB
All DBs
Position
1143113..1144804
Genome browser
AA seq
563 aa
AA seq
DB search
MKGIALAIFAILLGISSTVTASCPAWPEVRTQKEIERLAHQLSLWDDAYYQQGKSLVSDA
VYDDLKETLSAWRRCIKQGNEAESARMGSAGSSSHPVAHTGLKKLPDKRAVELWAKGRQN
LWAQPKVDGVAITLVYQHGRLVKMLSRGNGVKGEDWTHKTAGINSIPLHLSGPLANSVLQ
GELFLKREGHIQSLAGGVNARAKVAGEMLRTGAVSDPNALGIFIWAWPDGPESLAEKSNI
LRDAGFSLTALWSQPVANIDEIARLREGWFRQPLPFVTDGIVIRQEREPEAKFWQPGQGD
WAIAWKYPPAEQIAVVRNVDFAVGQTGKVSVVLELEEVLLDDKRVRRVNIGSLKRWQEWD
VVAGDKVKISLAGQGIPRMDEVVWRVSQRDTSIPEMVAFTPVTCLYASSECAEQFIARLT
GMGQKRVLDLAGVSQSTWRYLHMTSRFQHIFSWLDLNKTMLSGLPGISVKKAELLWHQFS
LSRKQPFIRWVVALGMPLPRSAHAVLKDKHWQQLGGWDQSRWQALPGVGAKRARQLVDFM
KHPQVVALAAFLSQHNIPGFGHQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaaagggatagcgttagcaattttcgccattttactggggatttcatctacggtaaca
gcatcatgcccagcgtggcctgaagtcagaacgcagaaggagattgaacgccttgcacac
cagttatctctctgggatgacgcctattaccagcagggaaagagtctggtgagtgatgcc
gtttacgatgatttaaaagagacactgtccgcctggcggcgctgcattaaacagggaaat
gaggctgaatctgcaaggatgggctcggcagggagctcgtctcaccctgttgcgcatacg
gggctaaaaaagttaccggataaacgtgccgtcgagttatgggctaaaggccgacagaac
ctatgggcgcaacccaaagtcgatggggtggctatcacattggtctatcaacacggccga
ctggtgaagatgctaagccgtggcaacggtgttaaaggagaggactggacacacaaaact
gctggtattaattccataccacttcatttatctgggccacttgcgaacagcgtattgcaa
ggcgagcttttcctgaaacgggagggccatattcaaagcctggcaggaggcgtgaatgcg
agagctaaagttgccggggaaatgcttcgtactggagcagttagcgatcctaacgcactg
ggtatttttatctgggcctggcctgatggccctgaaagccttgctgaaaagagcaatatt
ttgcgtgacgcaggtttttccctgaccgctctatggtcccaacctgtagcaaacattgat
gaaattgcccgcttgcgtgaggggtggtttcgccagccgcttccctttgtcacggatggg
attgtaattcgtcaggaacgtgaacccgaggctaaattctggcagccggggcagggtgac
tgggccatagcgtggaaatatccgccggctgagcaaatcgcggtggttcgtaacgttgat
tttgccgtggggcaaacgggcaaggtgtccgtcgtgcttgaattggaagaggttctgctc
gacgataaacgtgttcgacgggtaaatatcggctcactaaaacgctggcaggaatgggat
gttgttgcgggtgataaagtaaaaataagtctggcgggacagggaattcctcggatggat
gaagtcgtctggcgcgtcagccagcgagacacatccataccggaaatggtggcttttaca
ccggtaacttgcctttatgcttcatctgaatgcgcagagcaatttattgcccgcctgacg
gggatgggccaaaagcgagttctggatttagcgggcgttagtcaaagcacctggcgctat
ctacatatgacgtcacgctttcagcacattttctcatggctggatttgaacaagaccatg
ctgtctggtttaccaggcatttcggtgaaaaaagccgagttgttatggcatcaattttcg
ttgtcccgaaaacagccgtttattcgctgggtagtggccttagggatgccgctgccgcga
agtgcgcatgccgttcttaaagacaaacactggcagcagcttggcggctgggatcaatcc
cgatggcaagctttacccggagtgggggctaagcgggcaaggcagctagtcgattttatg
aagcatccacaggtggttgccctggccgccttccttagccagcataacatcccgggtttt
ggtcatcagtga
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