Coxiella endosymbiont of Amblyomma sculptum: EGQ50_02805
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Entry
EGQ50_02805 CDS
T06434
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cend
Coxiella endosymbiont of Amblyomma sculptum
Pathway
cend03030
DNA replication
cend03410
Base excision repair
cend03420
Nucleotide excision repair
cend03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cend00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGQ50_02805 (ligA)
03410 Base excision repair
EGQ50_02805 (ligA)
03420 Nucleotide excision repair
EGQ50_02805 (ligA)
03430 Mismatch repair
EGQ50_02805 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cend03032
]
EGQ50_02805 (ligA)
03400 DNA repair and recombination proteins [BR:
cend03400
]
EGQ50_02805 (ligA)
Enzymes [BR:
cend01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EGQ50_02805 (ligA)
DNA replication proteins [BR:
cend03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGQ50_02805 (ligA)
DNA repair and recombination proteins [BR:
cend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EGQ50_02805 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGQ50_02805 (ligA)
MMR (mismatch excision repair)
DNA ligase
EGQ50_02805 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGQ50_02805 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QHG92630
UniProt:
A0A6P1LKU0
LinkDB
All DBs
Position
579993..582026
Genome browser
AA seq
677 aa
AA seq
DB search
MMNLDKIRKQIDRLCREINEHNYRYYVLSRPVIPDAIYDKLFYKLQQLEIKHPELIVSIS
PTRRVGTLEPLKMFETAPHRIPMLSLDHVFDESGLRAFDKRVQQRLKLNELIEYICEPKM
DGVALNLLYKDGKLSCAALRGDGVTGENIIQNVRTISTIPSRLQGRDFPKLVEIRGEVLM
SRKEFKRINCESQKMGTRIFASPRNAVSGSLRQLNPEITASRSLVFYGYVLGATEGSLPK
KHSDVLIKIKKWGIPVFLGAKVIKGISGCFEYYAYFRRIRNIIPFDIDGIVIKVNTLSLQ
ETLGFSSRAPRWAMAYKFPTQEKMTVVKNIEFRIGRTGAVTPVAQLEPVSIGGVTVRKAS
LHNFDELHRKDVRIGDTVVIRRSGDVIPEVVMSLPTQRPKNAKIVNIPNFCPSCRRKVVK
PKNGIVARCIGNLSCPAQLRETIKHFVSRRAMNIKGLGDKWITMLIEKKIVKDIADIYKL
KKSSFLMLSRMGEKLTGNLLVSIEKSKKTTLPRFLYALGIRSIGVTSAQTLAQHFRGLKF
LMQASRKQLSVVKDIGPISAENISNFFQQKRNIALIDELIQLGVSCSENTETLSKITGKV
FVFTGTLKSLTRNEARERLQFFGGKVNSGISKNTDYLVIGNNLNNSRKSDKAKELNVPII
DEKIFLEFFKNTKEKKT
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatcttgataagattcgtaaacagatcgatagattgtgtagagaaattaatgaa
cataattatcggtattatgtactatcgagacccgttatcccagatgcgatctatgacaaa
ctcttttataaactacaacagctagaaatcaaacaccctgagttgatcgtgtctatttct
cctacaaggagggtaggaacgcttgaaccgttaaaaatgtttgaaaccgcgccccataga
attcccatgttatctctagaccatgtatttgatgaatctgggttgcgcgcatttgataag
agggttcaacaacgactaaaattgaatgaattaattgagtacatttgtgaacctaaaatg
gacggagtagcgctgaatttgttgtacaaagacggaaaattgtcttgcgccgctctgcgt
ggtgacggtgttactggagagaacataatccagaatgttcgaaccatttcaacaattcct
tcacgattgcaaggtagagattttcccaaacttgttgagatacgaggagaggttttgatg
tcacgaaaagaatttaaaaggatcaattgcgaatcgcaaaaaatgggaacaagaattttt
gcgagtcccagaaacgctgtttcaggaagtttgcgtcaattaaatccggaaatcaccgca
agtcgatctttagtgttttacggttatgtcttgggggcaactgaaggcagtttacctaaa
aaacacagtgatgttctaataaaaattaaaaaatggggaattccggttttccttggagca
aaagtaatcaaaggaatttcaggttgttttgaatactatgcatactttcgaagaattcga
aatatcatcccttttgacattgacggtatagttataaaggtcaataccctctctttacag
gaaacgttaggtttttcttcacgtgcccccagatgggcaatggcttataagttcccaact
caggaaaaaatgacagttgtaaagaacattgaatttcgtataggccgaaccggtgctgta
acacctgtagcacaactagaacctgtttctattggaggagtaacggtcagaaaagcttct
ctacacaattttgatgaacttcaccgaaaagacgttcgtataggcgatacagttgttata
cgtcgttctggagatgtcattccggaagttgttatgtctttgccgacacaacgacctaag
aacgctaaaatagtgaatatacctaatttctgtccttcgtgtcgaaggaaagtggtaaaa
ccgaagaatggaatcgtggctcgatgtatcgggaatttatcctgcccagcgcaattacga
gaaacgatcaaacattttgtttctcgacgagcaatgaatattaagggattgggcgacaaa
tggataactatgcttattgaaaaaaaaatagttaaagatatagcagacatctacaaactt
aagaaatcctctttcttgatgctttctagaatgggagaaaaactgactgggaatttatta
gtatccattgaaaaaagtaaaaagaccactctaccccgatttttatacgctctaggaatt
cgtagtatcggtgtaacgagcgcacaaactttagcacaacattttcgtggacttaaattt
ttaatgcaagcttccagaaaacaattatcagttgttaaagatattggtccaatttccgct
gagaatattagcaatttctttcaacagaaaagaaatattgcgttgattgatgaattgatt
caacttggagtttcctgttcagaaaatacagaaactttatcaaaaatcacgggaaaggtt
tttgtattcactggaaccctaaaaagtttgacacggaacgaagcaagagaaagactccaa
ttctttggaggaaaagtgaatagcggtatatcaaaaaatactgactatttagtcattgga
aacaatttgaacaatagcagaaaatccgataaggcgaaagaactaaatgttccaataatc
gacgagaagatttttctggaatttttcaaaaacacaaaggaaaaaaaaacatag
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