Comamonas endophytica: M9799_16630
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Entry
M9799_16630 CDS
T09983
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cenp
Comamonas endophytica
Pathway
cenp03030
DNA replication
cenp03410
Base excision repair
cenp03420
Nucleotide excision repair
cenp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9799_16630 (ligA)
03410 Base excision repair
M9799_16630 (ligA)
03420 Nucleotide excision repair
M9799_16630 (ligA)
03430 Mismatch repair
M9799_16630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cenp03032
]
M9799_16630 (ligA)
03400 DNA repair and recombination proteins [BR:
cenp03400
]
M9799_16630 (ligA)
Enzymes [BR:
cenp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9799_16630 (ligA)
DNA replication proteins [BR:
cenp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9799_16630 (ligA)
DNA repair and recombination proteins [BR:
cenp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9799_16630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9799_16630 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9799_16630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9799_16630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UYG51652
UniProt:
A0ABY6GBB7
LinkDB
All DBs
Position
complement(3654086..3656233)
Genome browser
AA seq
715 aa
AA seq
DB search
MPKNLDLFAPPGDDPGAEIEALRAQLRIWAHEYYVLDTPSVPDAEYDRLYRRLEALEAKH
PELVTPDSPTQRVIGAVMAGLAPVVHVVPMLSIRTETDTEASGAQAFDARVRRELGLDAG
DPPVEYVAEPKFDGLAMSLRYEGGRLVQAATRGDGSVGEDVTHNIRTIRRIPQVLPTDVP
PVLEVRGEVYMRRDDFETLNERQRAEGGKTFVNPRNAAAGAVRQLDSSITAQRPLAFFAY
GLGDITPAAQGGPAFATHYGMLQQLKKWGFPVAEQVSLAQGADELVAFHARMGAARDELP
YDIDGVVYKVNALALQRALGFVTREPRWAVAHKYPAQEMVTRVEAIDVQVGRTGKITPVA
RLAPVFVGGVTVTNATLHNLFELRRKRVRVGDEVIVRRAGDVIPEVVGVVPPRAAVAVGA
EASDALVDAAEQPPAQLPRTPYVANFHMPRQCPVCGSDVVREKGQMNHRCSGGLFCAAQR
KEALRHFAHRRAMDIEGLGDKLVDQLVEAQLVRTLPDLYRLTLEQLSGLDRMAEKSALNL
LAALEKSKSTTLARFLFALGIRQIGEATAKDLAKHFGTLDAIIAASEDQLLEVNDVGPIV
AQSIRSFFDQPHNLEVLAQLREECGIHWPEGAPAERPVQRLAGMTVVLTGTLPTMGRDEA
KERLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGVPVLDEAGLLALLAGN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagaatctggacctgtttgcgccgcccggggacgaccccggcgctgagatcgaa
gccctgcgcgcgcaattgcgcatctgggcccatgaatactatgtgctggacacgcccagc
gtgcccgacgccgagtacgaccggctctacaggaggctcgaggcgctggaagcgaagcac
cccgaactggtcacgcccgactcgcccacgcagcgcgtcatcggcgccgtcatggccggc
ctcgcgccggtcgtgcatgtggtgccgatgctcagcatccgcaccgaaaccgacaccgaa
gccagcggcgcgcaggccttcgacgcgcgcgtccgccgcgagctcggcctcgacgccggg
gacccgcccgtggaatatgtggccgaacccaagttcgacggcctggccatgagcctgcgc
tacgagggcgggcggctggtgcaggccgccacgcgcggcgatggcagcgtgggcgaggac
gtgacgcacaacatccgcaccatccgccgcattccgcaggtgctgccgaccgatgtgccg
ccagtgctggaagtgcgcggcgaggtctacatgcgccgcgatgatttcgagacgctcaac
gagcgccagcgcgccgagggcggcaagaccttcgtcaacccgcgcaatgcggccgcgggc
gcggtgcgccagctggattcatcgatcaccgcgcagcgcccgctggccttctttgcctac
ggtctgggcgacatcacgcccgcggcgcagggcgggccggcattcgccacccattacggc
atgctgcagcagctcaagaaatggggcttccccgtggcggagcaggtgagcctggcgcag
ggcgccgacgaactcgtggctttccacgcccgcatgggcgcagcgcgcgatgagctgccc
tacgacatcgacggcgtggtctacaaggtcaatgcactggcgctgcagcgcgcgctgggc
ttcgtcacgcgcgagccgcgctgggcggtggcgcacaagtatccggcgcaggagatggtc
acgcgcgtcgaggccatcgacgtgcaggtcgggcgcaccggcaagatcacgccggtggcg
cggctcgcaccggtgttcgtcggcggcgtcaccgtcaccaatgccacgctgcacaacctg
ttcgagctgcgccgcaagcgcgtgcgcgtgggcgatgaagtgatcgtgcggcgcgcgggc
gatgtgatccccgaagtcgtcggcgtggtgccgccgcgcgccgcggtggccgtgggcgcc
gaggccagcgatgcgctggtcgacgccgcggagcagccgcccgcgcagctgccgcgcaca
ccctatgtcgccaatttccacatgccgcgccagtgcccggtctgcggcagcgacgtggtg
cgcgaaaagggccagatgaaccaccgctgcagcggcgggctgttctgcgccgcgcagcgc
aaggaggcgctgcggcactttgcacaccggcgtgcgatggacatcgaagggctgggcgac
aagctcgtcgaccagttggtcgaggcgcaactggtgcgcacgctgcccgatctctaccgg
ctcacgctggagcagctctcggggctcgaccgcatggccgagaaatcggcgctcaatctg
ctggcggcgctggagaaatccaaatccacgacgctggcgcgcttcctgttcgcgctgggc
atccgccagatcggcgaggccacggcgaaggatctggcgaagcatttcggcacgctggat
gcgatcattgccgccagcgaggaccagctgctcgaagtcaacgatgtcggcccgatcgtg
gcgcagagcatccgcagctttttcgaccagccgcacaacctcgaggtgctggcgcagctg
cgcgaggaatgcggcatccactggcctgaaggcgcgccggccgaaaggcccgtgcagcgg
ctggccggcatgacggtggtgctgacgggcacgttgccgaccatgggccgtgacgaggcc
aaggaacggctcgaagccgcgggcgccaaggtcgcgggctcggtcagcaagaagaccagc
tacgtagtggcaggcgccgacgcgggcagcaagctggccaaggccgaggagctcggggtg
ccggtgctcgatgaagcggggctgctggcgctgctggcggggaactga
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