Citrobacter enshiensis: P2W74_00345
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Entry
P2W74_00345 CDS
T09732
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cens
Citrobacter enshiensis
Pathway
cens03030
DNA replication
cens03410
Base excision repair
cens03420
Nucleotide excision repair
cens03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cens00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P2W74_00345 (ligB)
03410 Base excision repair
P2W74_00345 (ligB)
03420 Nucleotide excision repair
P2W74_00345 (ligB)
03430 Mismatch repair
P2W74_00345 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cens03032
]
P2W74_00345 (ligB)
03400 DNA repair and recombination proteins [BR:
cens03400
]
P2W74_00345 (ligB)
Enzymes [BR:
cens01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P2W74_00345 (ligB)
DNA replication proteins [BR:
cens03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P2W74_00345 (ligB)
DNA repair and recombination proteins [BR:
cens03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P2W74_00345 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P2W74_00345 (ligB)
MMR (mismatch excision repair)
DNA ligase
P2W74_00345 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P2W74_00345 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WET40745
LinkDB
All DBs
Position
73057..74742
Genome browser
AA seq
561 aa
AA seq
DB search
MTLWKNIAISVLLCHSSAGAVCPAWSATRAEEEITRLTRQIAQWNDIYWKQGISAVDDTV
YDQLSAQLTQWRRCFGEEATTDPTAPPKNGSMLHPVAHTGVRKLADKQAMQQWMHRRSDL
WVQPKVDGVAVTLVYRDGNLIRAISRGNGLEGEEWTQKVRHIPSVPRTTKGTLANSVLQG
EIFLLQENHIQQQMGGMNARSKVAGMMMRADHSSSLSALGIFIWAWPDGPQSMPERLQKL
TDAGFSLTQRYTQPVNNVDDVEKARERWWTTSLPFATDGVVVRMGKEPEARSWLPGEGDW
LVAWKYTPVAQVAEVAEILFTTGKSGKTAVVASLAPVMLDDKKVQRVNLGSVRRWEEWDI
APGDRILVSLAGQGIPRIDDVVWRSTQRTKPTPPGGHLGSLTCFYASSECREQFIARLVW
LGSKSVLDLNGVGEAGWRALHQAHRFEHIFSWLALTREQLQNTPGVGKGKGAQLWHQFNM
ARRQPFIRWVMAMDIPLTQAALKVSGIRSWESLLAQTEPYWRMLPSTGERRARKVIQWRD
NPEIKTLSQWLAAQRIAGFMP
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacgttatggaagaacatcgcaatcagtgtattgctgtgccattcatcggctggcgcg
gtttgccccgcctggtcggcgacgagggcggaagaggaaataacccgcttaacgcggcaa
atcgcgcagtggaatgacatttactggaagcagggtattagcgcagtcgatgatactgtt
tacgaccaactcagtgcgcaactaacgcaatggcggcgctgttttggcgaggaggccact
acagatccgactgcaccgccaaaaaatggctcaatgttgcatcctgttgcccataccggt
gtgcgcaagcttgcggataaacaggcgatgcagcagtggatgcatcgtcgaagcgatctg
tgggttcagccgaaggtggatggtgtggctgtgacgctagtgtaccgggatggcaatctc
atcagagcgattagccgggggaacggactggaaggtgaagagtggacgcaaaaggttcgc
catattccgtctgtgccgcgcaccacaaaaggaacgcttgccaatagcgtcctgcagggc
gaaatcttcctgcttcaggaaaaccatatccagcagcaaatggggggaatgaatgcccgt
tctaaagtcgcagggatgatgatgcgtgcagatcattcctcctcgctaagcgcattaggc
atttttatctgggcgtggcccgatggcccgcagtcgatgcctgaacgattgcagaaactg
actgacgcggggtttagtttaacgcagcgctatacccaaccagtgaataacgtcgatgat
gttgaaaaagcgcgagagagatggtggacaacgagcctgccgtttgccaccgatggcgtc
gtggtacggatgggtaaagaaccggaagcccgaagctggcttcctggcgaaggggactgg
ctggttgcctggaaatacaccccggtggcgcaggtcgcagaggtggcggaaattctcttc
accacgggaaagagcgggaaaaccgcagtggtggcatcgcttgctccggttatgttggac
gataagaaggttcagcgtgtcaatcttggctccgtcagacgttgggaagagtgggacatc
gcacctggcgatcgcattcttgtcagccttgccggacaaggtattccccgtatcgatgat
gttgtctggcgtagtacgcagcggactaaaccaacacctcccggagggcatttgggttca
ttgacctgtttttatgcctcatctgagtgtcgggaacaattcattgcgagactggtttgg
ttggggtcgaaatcggtcttggatctgaatggtgtgggagaggctggatggcgagcgctt
catcaggcacatcgctttgagcatatattttcctggctggcgttaacccgggaacaatta
cagaacacgccaggagtaggcaaagggaaaggcgcgcaattgtggcaccagttcaatatg
gcgcgccgccagccctttatccgctgggttatggcgatggatataccgctaacgcaggcc
gcgcttaaggtcagcggtattcgttcgtgggagtcattgttggcgcaaaccgagccgtat
tggcgaatgctgccgtcaacgggcgagcgccgcgccagaaaggtcatacagtggagggat
aacccagagataaaaacgctgagtcagtggttagctgctcagcgtattgcggggtttatg
ccttag
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