Cyanobacterium endosymbiont of Epithemia turgida: ETSB_1371
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Entry
ETSB_1371 CDS
T03622
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ceo
Cyanobacterium endosymbiont of Epithemia turgida
Pathway
ceo03030
DNA replication
ceo03410
Base excision repair
ceo03420
Nucleotide excision repair
ceo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ceo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ETSB_1371 (ligA)
03410 Base excision repair
ETSB_1371 (ligA)
03420 Nucleotide excision repair
ETSB_1371 (ligA)
03430 Mismatch repair
ETSB_1371 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ceo03032
]
ETSB_1371 (ligA)
03400 DNA repair and recombination proteins [BR:
ceo03400
]
ETSB_1371 (ligA)
Enzymes [BR:
ceo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ETSB_1371 (ligA)
DNA replication proteins [BR:
ceo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ETSB_1371 (ligA)
DNA repair and recombination proteins [BR:
ceo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ETSB_1371 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ETSB_1371 (ligA)
MMR (mismatch excision repair)
DNA ligase
ETSB_1371 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ETSB_1371 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
BAP18119
UniProt:
A0A077JDV6
LinkDB
All DBs
Position
1996384..1998414
Genome browser
AA seq
676 aa
AA seq
DB search
MKVVIPEIQQRVTKLRQQLQKANYAYYVLDNPIIEDSIYDQLYRELQNIESQHPLLITPD
SPTQRVGEKLTSQFISIPHHIPLYSLENAFSLDELKKWQERWQSRYGVINNKNIDYVCEL
KIDGAALALTYKNGLLIKGLTRGDGKTGEDITQNVRTIRSIPLKLALDDSSTIVEIRGEA
FLPLDEFERLNVERGEVKESPFANPRNAVAGTLRQLDPKVVNQRRLQFFAYTLHLPQNNP
LNSQWESLEWLKNQGFLVNPHRQLCPSLEAVVNYFRHWETARHYLPYITDGVVVKLNNFR
LQKQLGFTKKFPRWAIALKYPAEESITIVKDIIVNVGRTGAVTPVALMEPVHLGGTIVRR
ATLHNHDRLTELNVHVGDTVIIRKAGEIIPEVLRVLPELHPLHSEPYKMPSHCPECGSML
VRPLGEAVTRCIYISCPAVLRGSLVHWASRDALDIQGLGEKIIILLVNNGLVKSIADLYY
LTPENMTTLDRIGQKYACNLVAAINNSKKQPWARVLYGLGIRYVGSVTAKLLANNFHSAE
QLSRVSVASLSSVYGVGEKIAKSIYDWFNIPKNTTLIKRLEEVGIQLKTSYNSIEKTASI
RQFFLNKIFVITGKLPTLTRSKAKDLIEKEGGKVTGSVSRNTDYLLIGENGGLKLKKARI
LKVNLLTEKELLNLLE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggtaataccagaaatacaacagagagttacgaaattacgacaacaactacaa
aaagctaattatgcttattatgttctcgacaaccctattatagaggactcgatttatgat
caactttatcgagaactacaaaatattgaaagtcaacatccgttattaattaccccagat
agtcctacccaacgagtgggagaaaaactaacttctcaatttatttctattccccatcat
attcctctctatagtctagaaaacgcttttagtctcgatgaattaaagaagtggcaagaa
cgctggcaaagtcgttatggagtcataaataataaaaatatcgactatgtttgtgaatta
aaaattgatggagcagcgttagctttaacctacaaaaatggactgttaattaaaggactt
accagaggtgatggaaaaacaggagaggatattacccaaaatgtgcggactattcggtct
attccactaaaattagctttagatgattcttctactatagttgaaattcgtggcgaagct
tttttacccctcgatgaatttgagcgcttaaatgtagagcgaggagaagtaaaagaaagc
cccttcgctaacccccgtaatgctgtcgccggaaccctcagacagttagatccaaaggta
gtgaatcaacgacggttacaatttttcgcttatactttacatttgcctcaaaacaacccg
ttaaatagccaatgggagtctttagaatggttaaaaaatcaagggtttttagttaaccct
caccgtcaattatgcccctctttagaagccgttgttaattactttcgtcattgggaaacc
gccagacactacttgccttatataactgacggggtggtagttaaactgaataattttaga
ctacaaaaacaattgggatttaccaaaaaatttcccaggtgggcaatcgctctcaaatat
cccgcagaagaatccatcacgatagttaaggacattattgttaatgtgggaagaacgggg
gctgttacccctgtggcacttatggagcccgtccatttgggaggaaccattgttcgacgc
gcaacgttacataatcacgatcgcctgactgagttgaatgtccatgtgggggatacagtg
attattcgtaaagcaggagaaattattcctgaagtcctacgagttttaccagaattacac
cctctccatagcgaaccctataaaatgcctagtcattgtcctgaatgtggttcaatgtta
gtccgtcctctgggagaagcggtgacgcggtgtatttatatttcctgcccagctgttttg
cgggggagtttagttcactgggcttcccgtgatgccttagatattcaagggttgggggaa
aaaattatcattttattagttaataatgggttagttaaatctattgctgacttgtattat
ttaacacctgaaaacatgactactttagaccgcataggtcaaaaatatgcttgtaattta
gttgccgctattaacaatagtaaaaagcaaccttgggcacgagttctttatgggttgggc
atccgttatgtgggtagtgttacggctaaattattagctaataattttcatagtgcggaa
caattatcccgggtatcagtagcgtctttaagttcagtttatggagtaggagaaaaaatt
gctaaatctatttatgattggtttaatattcctaaaaatacaacattaataaaacggtta
gaagaggtaggaatacagttaaaaacttcttataattctatagaaaaaacagcatcaata
cgacaattttttttaaataaaatttttgttattacgggaaaattaccaactttaacacgg
agtaaagcaaaggatttaattgagaaagaaggaggtaaagtcacaggttcagtgagtcgt
aatactgattatttattaatcggagaaaacggaggattaaaactaaagaaagctagaatt
ttaaaagttaatttattgactgaaaaagaattattaaatttacttgaataa
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