Crinalium epipsammum: Cri9333_2665
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Entry
Cri9333_2665 CDS
T02373
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cep
Crinalium epipsammum
Pathway
cep03030
DNA replication
cep03410
Base excision repair
cep03420
Nucleotide excision repair
cep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cri9333_2665
03410 Base excision repair
Cri9333_2665
03420 Nucleotide excision repair
Cri9333_2665
03430 Mismatch repair
Cri9333_2665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cep03032
]
Cri9333_2665
03400 DNA repair and recombination proteins [BR:
cep03400
]
Cri9333_2665
Enzymes [BR:
cep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cri9333_2665
DNA replication proteins [BR:
cep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cri9333_2665
DNA repair and recombination proteins [BR:
cep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cri9333_2665
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cri9333_2665
MMR (mismatch excision repair)
DNA ligase
Cri9333_2665
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cri9333_2665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DUF6792
Motif
Other DBs
NCBI-ProteinID:
AFZ13522
UniProt:
K9W1B1
LinkDB
All DBs
Position
2984122..2986161
Genome browser
AA seq
679 aa
AA seq
DB search
MASVTPGVKQRVEQLRKNIQAASYAYYVLDAPTMEDAVYDRLYRELQDLENQYPELITPD
SPTQRVGEKPASGFNSVRHNIPLYSLENAFNIAEFTKWQERWQRVSGSGEVSPDTPLYIC
ELKIDGNAIALTYENGILVRGTTRGDGISGEDITQNVRTIRSIPLRLNLETPPKLVEVRG
EAFLALDVFQQINQERQQAGETQFANPRNAAAGTLRQLDSKVVAKRRLDFFAYTLQIPGK
DDVEVAQTQWEALELLQKMGFRVNPNRVLCKSLEDVQAYYDEWNTGRLNLPYMTDGVVVK
INSFKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIIVNVGRTGALTPLAHLHPVELAG
TTVQRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLPELRPEGTQPFYIPSHCPV
CNQPVIKPANEAVTRCVNASCPAILKGALEHWVSRDALDINGMGEKLVHQLLDKGVVHSV
ADLYDLTVEKLSALDRMGTKLAQKLVDAIAHSKTQPWSRVLYGLGIRHVGSTNAQLLTDK
FSSVEQLAAATTPQIESLYGIGFEIANAVNQWFKVPANQSLIERLRAAGLQLASQEKPQQ
QTGKLSLAGKTFVVTGTLPTLKRDEAKDLIQKAGGKMTNSVSAKTDYLVVGEDAGSKLDK
AQELGVKQLSEADLLAMLQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtggcatccgtaacacctggagttaaacagcgagttgaacaacttaggaagaatatccaa
gcagctagttatgcttattatgttctggatgctccgactatggaggatgcagtttatgac
aggctgtatcgggaattacaagatttagaaaatcagtatccagaattaattacgccagat
agtccgacgcaacgggtgggagaaaaacctgcttctggatttaattcggtgcgccataat
attcctttgtatagtttggaaaatgcctttaatattgctgagtttaccaaatggcaggaa
cgttggcagcgagtttcgggaagtggggaagtatcaccggatacgccactatatatatgt
gagttaaaaattgatggtaatgcgatcgcactcacctatgagaatggtattttagttaga
ggtacgacgcggggtgatggtatttctggggaagatattacccaaaatgtgcggacaatt
cgcagtattcctttacgcctgaatttagaaacgccaccaaaattagtagaagtgcggggt
gaggcgtttttagcgttagatgtatttcaacaaattaatcaagaaagacagcaagcagga
gaaacgcaatttgctaatcctcgtaatgccgcagcaggcactttgcgacagttagattct
aaggttgtggcaaaacggcggttagatttctttgcttatactttacaaattcctggtaag
gatgacgttgaggtagcgcagacgcagtgggaagcgttggaattattgcagaaaatgggt
tttagagttaaccctaaccgtgtactgtgtaaatctttagaagatgtgcaagcttattat
gatgagtggaatactggcagattaaatttaccctatatgacggatggggtagtggtaaag
attaattcttttaagttacaagaacaattaggatttacgcaaaaatttccccgttgggcg
gtggcgttaaaatatccagcggaagaagcaccaacgcgggtagaaaatattattgtcaat
gtgggacgtactggggcgttgactccactggcacatttacacccagtagagttagcaggg
acgacagtacaaagagctactttacataatagcgatcgcattgctcaattagatatccgt
attggggatactgtaattgtccgaaaagctggggaaattattcccgaagtggtgcgcgtt
ttaccagaattacgcccagagggaacacaacctttttatattccttcccattgtcccgta
tgtaatcaacctgtgattaaacctgcaaatgaagcagtaactcgatgtgtaaatgcttct
tgtcccgctattttaaaaggtgcgttggaacattgggtaagtcgggatgctttagatatt
aatggtatgggtgaaaaactggtgcatcagttattagataaaggtgtggtgcattccgtc
gcagatttgtatgatttaactgtggaaaagctttctgctttagacaggatgggtactaag
ttagcacagaaattagtagatgcgatcgcacattctaaaactcaaccttggtcaagggta
ttatacggtttaggcattcgtcatgttggcagtacaaatgctcaattattaacagacaaa
tttagtagcgttgaacaattagcagcagctactactcctcaaattgaatcactttatgga
attggttttgaaattgctaacgctgtgaatcaatggtttaaagtaccagctaatcaaagt
ttaattgaacgtctacgtgctgcgggtttacaattagccagtcaggagaaaccacaacaa
caaacaggtaaattatctttagcaggtaaaacttttgtggttactggaactttgccgaca
ttaaaacgagatgaagctaaggatttaattcaaaaagctgggggaaagatgacaaattct
gtgagtgcgaaaactgattatttagttgtgggagaagatgctggttctaagttggataag
gcgcaagagttgggagtaaaacagttaagtgaagctgatttactcgctatgttgcaatag
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