Coxiella-like endosymbiont of Amblyomma americanum: B1F76_02875
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Entry
B1F76_02875 CDS
T07659
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ceq
Coxiella-like endosymbiont of Amblyomma americanum
Pathway
ceq03030
DNA replication
ceq03410
Base excision repair
ceq03420
Nucleotide excision repair
ceq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ceq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1F76_02875 (ligA)
03410 Base excision repair
B1F76_02875 (ligA)
03420 Nucleotide excision repair
B1F76_02875 (ligA)
03430 Mismatch repair
B1F76_02875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ceq03032
]
B1F76_02875 (ligA)
03400 DNA repair and recombination proteins [BR:
ceq03400
]
B1F76_02875 (ligA)
Enzymes [BR:
ceq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B1F76_02875 (ligA)
DNA replication proteins [BR:
ceq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B1F76_02875 (ligA)
DNA repair and recombination proteins [BR:
ceq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B1F76_02875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1F76_02875 (ligA)
MMR (mismatch excision repair)
DNA ligase
B1F76_02875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B1F76_02875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
DUF4874
RPA_interact_C
Motif
Other DBs
NCBI-ProteinID:
AUJ58974
UniProt:
A0A3Q8CEX3
LinkDB
All DBs
Position
611621..613636
Genome browser
AA seq
671 aa
AA seq
DB search
MIILEKIRRQIEQLRREINQHNYQYYVLSEPIISDETYDELFSKLRQLETQYFKLVVPTS
PTQRVGALPLKKFKTVFHKMPMLSLDHVFNTSALLAFEKRVQQRLKLDQPIEYACEPKMD
GVALNLLYEHGKLVRAATRGDGVIGEDVTQNAKTITTIPLQLRGQDFPQLIEIRGEVLMS
RKEFKKLNEESKKLGTKAFVSPRNAASGSLRQLDPQITAQRQLSFYGYALGAVRGGILPQ
KHSDVLIKFRKWGIPIVPKTVVVKSIKNCFHYCEYFQKIRDTFSFDIDGMVIKVNVLALQ
EALGYIARAPRWAVAYKFLAQEKITTVKSIEFYVGRTGAVTPIARLAPISIGGVTIKNAT
LHNFNELHRKDIRVGDTVIVRRSGDVIPEIIAPLLGRRPRNTKQVNVPKFCPICQTKVIK
LENEVVVRCIGGLSCTAQLRETIKHFVSRRAMNIKGLGDKWIATFIKEKVIKDIVDIYKL
NINSLIALPRIGKKLAENLLAAIEKSKKTTLTRFLYALGIVGVGETSARALSQHFQELRP
LMEASDRQLLAVKNIGPITAKNVRNFFQQDRNIALISALIHLGISFVKERTNLQSEISGK
VFVLTGKLESLTRDTAKEKIKLFGGKTNNNVSKNIDYLVVGENPGDKKYDKAKKLDISII
NEKVFLTLLKQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgataattcttgaaaagattcgtagacagattgaacaattacgtagagaaattaatcaa
cataactatcaatactatgttttatcagaacctattatatctgatgaaacctatgatgaa
cttttttctaaattacgacaattagaaacacaatattttaagttggtggtacccacttct
cccactcagcgagtaggagcattgcctcttaaaaaatttaaaactgtctttcataagatg
cctatgttatccctggatcatgtgtttaatacatcggcattgctggcatttgagaaacga
gttcaacagcgattaaagttagatcaacctattgagtacgcttgtgaacctaaaatggat
ggagtagcattgaatttactttatgaacatggcaagttggttcgtgctgctacgcgaggc
gatggtgttataggagaagatgttactcagaatgctaaaacgattacaacaattccctta
cagttaaggggtcaggactttcctcaactgattgaaatacgaggagaagtgttgatgtcc
cgcaaagagtttaaaaaacttaatgaagaatcgaaaaaattaggaacaaaggcatttgta
agtcctagaaacgctgcttcaggaagcttacgtcaattagatccacaaatcacagcacaa
cggcagttgtcgttctacggttatgctttaggtgctgttagaggcggtattttgccacag
aaacacagcgacgtcctaataaaattcagaaaatgggggattcccattgttcctaaaaca
gtagtggtaaaaagtataaaaaactgttttcattattgtgaatattttcagaagatacgt
gacaccttttcttttgatattgatggtatggtaataaaagttaatgtgcttgctttacaa
gaggcattgggatacattgcacgtgctcctagatgggcggttgcttataaatttttagct
caagaaaaaataacaactgtaaagagtattgaattttatgtagggcgtactggtgctgta
acacctatagcccgattggcacctatttccattggaggagtaacaattaagaacgctact
ttacataattttaatgaattgcatcgaaaagatattcgtgtaggtgatacagttattgta
cgccgttctggtgacgtaattccagaaattatcgcacctttattaggacgacgaccacgg
aatactaagcaggtaaatgttcctaagttttgtcctatatgtcaaacgaaagtgataaaa
ttagaaaacgaagttgtagttcgatgtataggaggtttgtcttgtacagctcaattacga
gaaacaattaaacattttgtttcacgtcgagcaatgaatatcaaaggattgggtgataaa
tggatagcgacttttattaaagaaaaagtaattaaagacatagtggatatttataaactt
aatataaattctctcatagcgcttcctagaataggaaaaaaattggctgaaaatttacta
gcggctattgagaaaagcaaaaagactactttaacacggtttttgtatgcattagggatt
gttggagttggtgaaacgagtgcaagggctttatctcagcattttcaagaacttaggcct
ttaatggaagcttctgatagacaacttttagctgttaaaaatattggtccaattactgca
aagaatgttagaaacttttttcaacaggaccgtaatattgcactgattagcgcattaatt
cacctcggcatttcttttgtaaaagagagaacaaatttacagtcagaaatttctggaaag
gtttttgttcttactggtaaattagaaagtttgacgcgagacacagcaaaagaaaaaatt
aaacttttcggaggaaaaaccaataataatgtatctaaaaatattgattatttagttgtt
ggagaaaatccgggtgataaaaaatacgataaggcaaaaaaattagatatttctattatc
aatgaaaaggtctttttgacattattaaaacaatga
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