Cutibacterium equinum: O6R08_07305
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Entry
O6R08_07305 CDS
T09514
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cequ
Cutibacterium equinum
Pathway
cequ03030
DNA replication
cequ03410
Base excision repair
cequ03420
Nucleotide excision repair
cequ03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cequ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O6R08_07305 (ligA)
03410 Base excision repair
O6R08_07305 (ligA)
03420 Nucleotide excision repair
O6R08_07305 (ligA)
03430 Mismatch repair
O6R08_07305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cequ03032
]
O6R08_07305 (ligA)
03400 DNA repair and recombination proteins [BR:
cequ03400
]
O6R08_07305 (ligA)
Enzymes [BR:
cequ01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O6R08_07305 (ligA)
DNA replication proteins [BR:
cequ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O6R08_07305 (ligA)
DNA repair and recombination proteins [BR:
cequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O6R08_07305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O6R08_07305 (ligA)
MMR (mismatch excision repair)
DNA ligase
O6R08_07305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O6R08_07305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WCC79339
LinkDB
All DBs
Position
complement(1599981..1602197)
Genome browser
AA seq
738 aa
AA seq
DB search
MVDDPTRDADLEAGGFQARDRWTELTQRILKAQDAYYANDAPTISDAEYDQLMIELTTLE
DDHPELRTPDSPTQRVGAPQRVTDFAPVEHLERLLSLDNVFTRDELSDWMARVAASVGEV
PNFLCELKIDGLAVDLVYRDGELVSGATRGDGRMGEDVTANVRTIKAIPHKLSGDDVPRV
LEVRGEVFFPVADFADLNAALVEAGKNPFANPRNAAAGSLRQKDSRVTASRPLAMIVHGI
GAIEGHEFPSQGHAYDKLAEWGLPVSPYFEIVETADQVHDYVTHWGHSRSEASHQIDGVV
VKLDDVSVQRALGATSRAPRWAIAYKYPPEEVNTKLLDIRVNVGRTGRVTPYGVMEPVSV
AGSTVEMATLHNAFEVKRKGVLIGDTVVLRKAGDVIPEILGPVVELRDGSEREFVMPDHC
PSCGAELAYEKDGDKDLRCPNAKECPSQLRERVFGLASRGALDIEALGWGAAIALTDPEN
QRPAEGEIGEGLAHPQVPVLRSEAGLFDLQPDDLAEVKVWRRRKVRGTLGPWQLEPYFFT
KPTSKKPSVPTATTTKMFDELAKAKSQPLWRVLVALSIRHVGPTAARALATHFGSIPAIR
EASLEELAGVDGVGQIIAESVHQWFEVDWHQDIVNRWAAAGVRMADDRDETPEQTLEGLT
VVVTGSLEGFTRDEAKEAIVSRGGKAAGSVSKKTDYVVVGDNAGSKETKARELGRPILDE
AGFRHLLDNGPQGVPTVA
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggttgacgatcccacccgagatgctgacttggaggcaggcgggttccaggcgcgcgat
cgctggactgagctgacccagcgcatcctgaaggcccaggacgcctattacgccaatgac
gccccgacgatctccgacgccgagtacgaccagctcatgatcgagctgacgacgcttgag
gacgatcacccggagttgaggactcccgattcgcccacccaacgggtcggggccccgcaa
cgggtgaccgacttcgcccccgtggagcatctggaacgtctgctgagcctggacaacgtc
ttcactcgcgacgagctctcggactggatggccagggttgcggcgtcggtcggagaagtc
ccgaatttcctgtgcgagctcaagattgatggccttgccgtcgatctggtgtaccgcgat
ggtgaactggtctcgggggccactcgtggcgatggtcgcatgggggaggatgtcactgcg
aacgttcgcaccatcaaggcgattccgcacaagctgagtggtgacgacgtcccacgtgtg
ctcgaagtacgaggcgaagtcttcttcccggtcgccgatttcgccgatctcaacgccgcc
cttgtcgaggccggcaagaaccccttcgccaatcctcgtaacgcggctgcggggtctctg
cggcagaaggattcccgagttacggcctcacgtccgctggcgatgattgttcacggcatt
ggcgccattgaaggacacgagttccccagccaagggcatgcctacgacaagcttgccgaa
tggggcttgccggtttctccctacttcgagattgtcgagactgccgaccaggtgcatgac
tacgtcacccactggggccactcgcggagcgaggcttcacaccagatcgacggcgtggtg
gtcaagctcgacgacgtctccgtgcagcgcgcgctgggtgcaacctcgcgagctccccgg
tgggccatcgcctacaagtacccgccggaggaggtcaataccaagctcctcgacatccgt
gtcaatgtcggaaggaccggccgtgtcacgccgtacggggtcatggagccggtgagtgtt
gcaggatcgaccgtcgagatggccaccctccacaatgccttcgaggtcaagcgcaaggga
gtcctcatcggagacaccgtggtgttgcgcaaggccggcgacgtcattcccgagatcttg
gggccggtggtcgaactgcgtgacggttccgagcgggaattcgtcatgcccgaccattgc
cccagttgtggggctgagctggcctacgagaaggacggtgacaaggatcttcgttgcccc
aacgcgaaggaatgcccttctcaactgcgggagcgtgtttttgggttggcctcacgggga
gccctcgacatcgaggcactcggctggggggccgccatcgctctgactgacccggagaac
cagcgccccgccgaaggtgagattggcgaggggcttgcccaccctcaggttccggtgctt
cgcagcgaggctggtctgttcgacctgcagcccgacgacttggccgaggtcaaggtgtgg
cgtcgtcgcaaggtgcgcggcacgttgggtccctggcagctcgagccctacttcttcacg
aagccaacatccaagaagccatccgtcccgaccgccacgaccacgaagatgttcgacgaa
ttggccaaggccaagtcacagcccctgtggcgggtgctggtggcgctgtcgattcgccac
gtcggcccgacggcggccagggctttggccacccacttcggttcgatcccggccatccga
gaagcgtccctggaggaactcgccggggtcgatggggtcggccagatcatcgcagagtcg
gtgcaccaatggttcgaggtcgactggcaccaggacatcgtcaaccggtgggctgcggct
ggggtgcgaatggccgacgatcgcgatgagacacctgagcagacattggaagggctgacc
gtggtcgtcacgggaagtctggaaggctttacccgcgacgaggccaaggaggccattgtg
tcccgagggggcaaggctgctggatcggtgtcgaagaagacggactatgtcgtcgtgggg
gacaacgccgggtccaaggagaccaaggcacgtgagttgggccgcccgatcctcgacgag
gccggtttccggcacctgctcgacaacggcccgcagggagttccaactgtcgcctga
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