KEGG   Chanodichthys erythropterus (predatory carp): 137006605
Entry
137006605         CDS       T10334                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
cery  Chanodichthys erythropterus (predatory carp)
Pathway
cery03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cery00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137006605 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cery03041]
    137006605 (smndc1)
Spliceosome [BR:cery03041]
 Complex A
  U2 snRNP components
   U2 related factors
    137006605 (smndc1)
 Complex B
    137006605 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    137006605 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 DUF2730
Other DBs
NCBI-GeneID: 137006605
NCBI-ProteinID: XP_067223605
LinkDB
Position
18:complement(10376170..10379442)
AA seq 246 aa
MNANAVLNKMSEELVKQLSNYKAQLQQVEAALSTDPDNEDLLKLQKDLQEVIELTKDLLT
SQPVEGAASTKSSETVAPTHSWRVGDHCMAIWSQDGQLYEAEIEEIDSENGTAAITFAGY
GNAEVLPLHVLKEVEEGRSREEKDGKPKSKKELLAEQREYKKKKAQKKVQRMKELEQERE
VQKSKWQQFNNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNV
RHLMPQ
NT seq 741 nt   +upstreamnt  +downstreamnt
atgaacgcaaatgctgtattaaataaaatgtctgaagagttggtaaagcagttgagcaat
tataaagctcagctgcagcaggtggaagcggcactctctacagatccagataatgaagat
ctgcttaaactgcagaaggatctccaggaagtgattgagttgacaaaagacctgttgaca
tcacagcctgtggagggtgcggccagcaccaaaagctcagagacagtcgctcccactcac
agctggagggtcggagaccattgcatggccatctggagccaggacggacagttgtatgag
gcggaaattgaagagattgacagtgagaacggcacggcagccatcaccttcgctggctat
ggcaacgcagaggtgttgccgcttcatgtgctcaaagaagtggaggagggcaggagcagg
gaagagaaggatggaaagcccaaatccaagaaagagctgctggcagaacagagggaatat
aagaagaaaaaggcccaaaagaaggtgcagcgcatgaaggagctggagcaagagagagaa
gttcagaaatccaaatggcagcagtttaacaacaaagcctattccaaaaataagaaagga
caggtgaagaggagtatatttgcatctccagagagtgtgaatggaaaggttggcgtcggc
acgtgtggtatcgcagataaacccatgacccagtacaatgacacttcaaagtataatgtc
aggcacctaatgccccagtga

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