Chanodichthys erythropterus (predatory carp): 137008914
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Entry
137008914 CDS
T10334
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04622
RIG-I-like receptor signaling pathway
cery04623
Cytosolic DNA-sensing pathway
cery05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
137008914 (rigi)
04623 Cytosolic DNA-sensing pathway
137008914 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
137008914 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cery04054
]
137008914 (rigi)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137008914 (rigi)
Pattern recognition receptors [BR:
cery04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
137008914 (rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SNF2-rel_dom
PhoH
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
137008914
NCBI-ProteinID:
XP_067226798
LinkDB
All DBs
Position
20:complement(37370083..37388690)
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AA seq
947 aa
AA seq
DB search
MYELEKENLRRLSDNIARFLQPSLIKTFMTAYFDKETVEKILSTEETLSVTKAAQMLLDQ
MCYLEKVGWFQEFLDILYTSEYTGLHKAIKEWNFSELEELDEHRKLLERIEPSFTKLIKP
GELLAYMNDCLNIREREEIKAVESHRGYIAASQKLVDSLLRSDKPNWFKVLKIALDACRF
DQALELLESNGGGTAAKGCGSDREAEAMTTETTTTVCFEFREEPESEDMLMSANNMTPTE
TPSKFTGEHDRSGEIKLREYQKELTAAAVQGQNTIICAPTGCGKTIVALAICEYHLKQNP
GRAKIVFLATKVDVYEQQYKLFMKHFSRTDPSIRVTGMCGDMDLSVQWLIENHDIVVMTA
QILVNALQSGEVPSLEVLSLILLDECHNTTGKHPYNNIMTRYLDTKLASSTHSLPQIVGL
TASVGIGSFKNRPEAENNILQLCANLDTRVITTVKKQLDELKTYVHTPEKEFFEVPKHTY
DPFIRIIKNIMGNIEQLAQKAFNIESLSNIQNREYGSQKYEQWIVSVQKSCRVIQMKDIN
EERRICRELYNYTEHLRKYNDALIINEDARTKDALDYLDGFFEQVRNAGYDETERKLTAF
YDSQRPQLLHLATEGQQNPKLEELKFILEEEYHNNEETRTVLFVKTRALADAMKKWIDDT
DSLKFLKPGVLIGKGRKSNFTGSVMTLTSKKGVLDSFKSTDQNSDQSKILIATSVADEGI
DIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSRCFLISSSKECIEKERINMIKEQIVEEA
IVQLQSHPAELSNKVDVLQREDKARRDHVSASPDKPKTRGSYQLLCGKCKKFACFSDDLR
VVQESHHIALDRSMFERCVTVPHKNPKTFQGFNKKEKMLCAECKRDWGLIASHLTIQDLP
LLKIESFVVQNCDTRQQFYFRKWRDVTFAIREFDMTEITPQTWPMRD
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggaaaaggagaatttgcggcgcttgagcgataatatcgcgcggttttta
caaccgtcacttatcaaaaccttcatgacggcgtactttgataaagagacagtggaaaag
attctctctacagaggagactttgtctgtgaccaaagctgcccagatgctgctggaccag
atgtgttatctggaaaaagtgggctggtttcaggaatttctggacatcctgtatacctca
gaatatactggtctgcacaaggccattaaggagtggaacttcagtgagttagaggaactg
gatgagcaccggaagcttttggagagaatcgaaccatcattcaccaaactcataaagccc
ggcgagctgcttgcgtacatgaacgactgtctcaacatcagagagcgtgaagagatcaaa
gcggtggaaagccatcgcggttatatagctgccagtcagaaactagtcgacagtctcctg
cgctcagataaacccaactggtttaaggtgctgaagattgcactggatgcctgcagattc
gatcaggcgctggagctgctggagtccaatggaggtggtacggctgcgaagggctgcgga
tcggacagggaggcggaagccatgacaacagaaaccacgacgacagtgtgttttgagttc
agagaggagcctgagagtgaagacatgctgatgagcgcaaacaacatgactcccacagag
acacctagcaagttcacaggggaacatgatcgttcaggtgagattaagctgagggaatat
cagaaggagctgacggctgctgctgtccaggggcaaaacaccatcatctgcgcccctaca
ggatgtggaaaaacaattgtggcattggccatctgtgaataccacctgaaacagaatcct
ggacgggcaaagattgtgttcttggcaaccaaggttgacgtctatgaacaacagtacaag
cttttcatgaaacacttttcccgcaccgatcccagcatcagggtgacgggtatgtgcggt
gatatggatctgtccgtgcagtggctcatagagaatcatgatatcgtggtgatgacggct
cagatcctggtgaacgcactgcagagcggagaggtgccgtcactggaggtgctgtctctc
atcctgctggatgagtgtcacaacacgactggaaaacacccatacaacaacatcatgacc
cgctacctggacaccaaactcgcctccagcacacactcactgccacagattgtgggcctg
acggcgtcggttggcatcggttccttcaagaacaggccggaggcagagaacaatatctta
cagctctgtgccaacctggacaccagggtcatcaccacggttaagaaacagctggatgag
ctcaagacgtacgtgcacacacctgagaaagaattttttgaggttcccaagcacacgtat
gaccccttcatcagaataatcaaaaacatcatgggtaacatcgagcagctggcgcagaag
gccttcaacatcgagagcctgtcaaacatccagaaccgcgagtacggctctcagaaatat
gagcagtggatcgtctcagttcagaagagctgcagagtcatacagatgaaggacatcaac
gaggagagacgaatctgcagagaactctacaactacaccgaacacctgcggaaatataac
gacgctctgatcattaatgaggacgcccgcactaaagatgctcttgattatctggacggg
ttttttgagcaggtccgaaacgccggctacgatgagacagagaggaaactcactgcgttc
tacgacagtcagcggccgcagttgctacatttggccacagaggggcagcagaaccctaaa
ctagaggagctgaagttcatcctggaggaagagtatcacaacaatgaagagacgcgcacc
gtcctgttcgttaagacacgcgccctcgctgacgccatgaagaaatggatcgatgacacc
gattccctgaagttcctgaagcctggagttctgataggaaaaggacgaaaatccaacttt
accggctcagtaatgacactgaccagtaagaagggggttttggactcttttaagagcaca
gatcagaactcagatcagagtaagatactcatcgctacatcagtcgctgatgaaggcatc
gatatcccacagtgcaacctggttctgatgtatgaatatgtgggtaacgtggtgaagatg
gtgcaagttcgaggtcgtggtcgtgcgcagggcagccggtgtttcctgatctccagtagt
aaggaatgcattgagaaggagcgcataaacatgattaaggagcaaatcgtggaggaggcc
attgtccaactgcagagccaccccgctgaactcagtaacaaggtggatgtgttgcagaga
gaagataaggcccggagggatcacgtcagcgccagtcccgacaaacccaaaacacgcggc
agctaccagctcctctgcggcaagtgcaagaagtttgcttgctttagtgacgacctcaga
gtcgtgcaggagtctcatcacatcgctctggatcgctccatgtttgaacgctgtgtaact
gttcctcataagaacccaaaaaccttccaaggcttcaataagaaagagaagatgctctgt
gccgagtgcaaacgcgactggggcctcatcgcctctcacctcacgatccaggatctgccg
ctgttgaagattgagagtttcgtggtgcagaattgcgacactcgccagcagttttacttc
aggaaatggcgcgacgtgacatttgccatccgagagtttgacatgacggagatcacgcct
caaacatggccgatgagagactga
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