Chanodichthys erythropterus (predatory carp): 137019006
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Entry
137019006 CDS
T10334
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04115
p53 signaling pathway
cery04145
Phagosome
cery04148
Efferocytosis
cery04350
TGF-beta signaling pathway
cery04510
Focal adhesion
cery04512
ECM-receptor interaction
cery04820
Cytoskeleton in muscle cells
Brite
Membrane trafficking [BR:
cery04131
]
Endocytosis
Phagocytosis
Opsonins
137019006 (thbs1b)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137019006 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137019006
NCBI-ProteinID:
XP_067240041
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Position
4:complement(8177585..8188212)
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AA seq
1172 aa
AA seq
DB search
MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKNDGSGPVFEIIS
NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA
SIQSILTQETPGVASLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSAIMTDI
ITLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVQELSKELRK
VVDEKTVLMNYMGIHAGVCLHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEG
RQTERCEKSPCPINGGWGPWSPWDTCSVTCGGGVQNRKRLCNDPIPKYGGKDCVGDAKAS
QLCNKQACPIDGCLSNPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDINECEEVPDT
CFEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFSDPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYQCKKDNC
PNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCP
YNSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDFDGVGDQCDNCPL
EHNPDQLDSDADRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDD
DNDGIPDDKDNCRLVSNPDQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaactgctatctttttgctactgatgctttggaactgcgagagcgcgagagtc
gcagaaagtcgagacgacaacagtgtttacgatctgtttgagctcgtccaagtgccgagg
aaaaaccacggggtcaccctggtgaaaggcgacgacccgtacagccccgcctacaagatc
ctgaaccccgacctgatccccccggttcccgagagcgccttcagggacctaatcgattcc
attcacgccgagagaggatttctgctcctggtcaatttcaagcagttcaagcacacgagg
ggaagccttctgaccgtggagaagaatgacggctccggacccgttttcgaaatcatttcc
aacgggaaagccaacactctggacattgttttttccactgaaaacaagcaacaggtcgtg
tccatcgaagaagcggatttggcggtgggacactggaaaaacatcactcttttcgtgcag
gaggacagggttcagttctatgtgggatgtgaggaggtgaatacagcggagctcgatgct
tctatccagtcaatcctcactcaggagaccccaggggtggcgagcttgaggatcggcaag
ggcgcagtgaaggacaggttcatgggggtgctgcaaaacgtgcgctttgtgttcggaaca
actctggatgcgattctgaggaataaaggatgccaaaactcagcaattatgactgatatc
atcacccttgacaatcccataaatggatccagacctgcaatcaggactgattacaccggc
cacaaaacaaaagatctgcagatgatttgtggcttctcatgtgaggacctggctggcatg
ttcaaggaactgaaaggtcttggtgtggtggtgcaagaactgtccaaagaactccgcaaa
gtggtggatgagaaaaccgtgctcatgaattacatgggcattcatgctggtgtctgtctt
cacaatggaattgtgcacaaaaacaaggatgaatggacggtggatgattgcacagagtgc
acttgccagaactctgcaacggtgtgccgcaagatttcatgtcccctgatcccgtgtgca
aacgccacagtgcctgatggggaatgctgccctcgttgtggaaccccgagcgactccgct
gaggatggctggtccccctggtctgaatggacccattgttctgtgtcctgtggaaggggc
attcagcagcgcggccgctcttgcgaccgcatcaataacaactgcgagggcacgtctgtg
caaacgagagactgctacctccaggagtgtgacaagcgctttaagcaagatggcagctgg
agtcactggtcaccctggtcctcctgctcggtcacctgtggtgctggcgttatcactcgc
atccgtctctgcaactccccaacacctcagatggaaggcaaagattgtcagggtgaaggt
cggcaaactgagaggtgtgagaaatcaccatgtccgatcaatggcggctggggaccatgg
tcaccctgggatacttgctccgttacctgtggcgggggcgtccaaaatcgtaagcgtctt
tgcaatgacccaatacccaagtatggtggcaaagactgcgtaggagacgcaaaggccagc
cagctttgcaacaaacaagcctgtccaattgatggatgtctttcaaatccatgctttgaa
ggagcccagtgtacaagcttcccagatggctcttggaaatgtggaaaatgccccacagga
tacactggcaatggaatcaactgcaaggatatcaatgagtgtgaggaagtccctgacacc
tgctttgaatttaacggagtccataggtgtgagaacacagtgccaggctacaactgcctg
ccatgccccactcgctacaccggcccacagccatttggtcgaggagtggaagatgctgct
gccaagaaacaggtgtgcacgcctcgtaatccctgcctcgatggaagccacgactgcaat
aagaacgctcgctgcaactacctgggccatttctcagaccctatgttccgatgtgagtgc
aaacctggctttgctggaaatggacacatctgtggagaggacactgatcttgatggctgg
cctaatgctgatcttgtgtgtgtcgagaacgcaacctatcagtgcaaaaaggacaactgc
cccaatcttcccaactctgggcaagaggactatgacaaggatggaattggtgatgcttgt
gatgatgatgatgacgatgatggcattcctgatgacagggacaactgcccactcatcttc
aacccaagacagtacgactatgatcgcgacgacgtgggagaccgctgtgataactgtccg
tacaacagtaacccagaccagactgacacggacaataatggtgaaggtgacgcctgtgct
gtggacattgatggagatggtattttgaatgagaatgacaactgcccatatctgtacaac
gtcgaccagaaagacaccgatttcgatggagttggtgatcaatgtgacaactgccctctg
gaacacaacccagaccagctcgactctgatgcggaccgtgttggagacaaatgtgacagc
aaccaggatatcgacgaggacggccaccaaaacaacctagacaactgcccgtacatccct
aatgcgaaccaggccgatcacgacaaggatggtaaaggagatgcctgtgactatgatgat
gataatgatggcatccctgatgacaaagacaactgcagattggtttctaatccagatcaa
ctggattctgatggcgatggacgtggtgatgcctgcaaagacgactttgaccaggacaat
gtcctagatatctatgatgtgtgtcctgagaactttgacattagtgaaaccgacttccgc
aaattccagatggtacctctggatcccaagggcacttctcagattgaccccaactgggtg
gttcgtcaccaaggaaaagaactggttcagacagtcaactgcgaccccggcattgctgtt
ggttttgatgaattcaattcagtcgacttcagtggaacgttcttcatcaacacagagagg
gatgatgactacgccggctttgttttcggataccaatccagctctcgcttctacgtggtc
atgtggaaacagatcacacagacctactggtccagcacacctaccaaggcacagggttac
tcagggctgtcaatcaaagtggttaattccaccacagggccaggcgaacatctgaggaac
gccctctggcacaccggagacactccaggacaggtgcgcacgctgtggcatgacccgaag
aacgtgggatggaaggacttcactgcttacagatggcacctgacgcatagaccaagaact
ggacatataagagtggtcatgtatgaaggcaaaaaaatcatggcagattctggcagaatt
tatgacaaaacatacgcaggcggaagactgggtctctttgtcttctcacaagagatggtg
tacttttcagacctcaaatacgaatgcagagatgcgtaa
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