Chanodichthys erythropterus (predatory carp): 137019006
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Entry
137019006 CDS
T10334
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04115
p53 signaling pathway
cery04145
Phagocytosis
cery04148
Efferocytosis
cery04350
TGF-beta signaling pathway
cery04510
Focal adhesion
cery04512
ECM-receptor interaction
cery04518
Integrin signaling
cery04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
137019006 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137019006 (thbs1b)
04518 Integrin signaling
137019006 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
137019006 (thbs1b)
04148 Efferocytosis
137019006 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
137019006 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
137019006 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137019006 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cery04131
]
137019006 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cery00536
]
137019006 (thbs1b)
Membrane trafficking [BR:
cery04131
]
Endocytosis
Phagocytosis
Opsonins
137019006 (thbs1b)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137019006 (thbs1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
Zn_ribbon_NUD
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
137019006
NCBI-ProteinID:
XP_067240041
LinkDB
All DBs
Position
4:complement(8177585..8188212)
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AA seq
1172 aa
AA seq
DB search
MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKNDGSGPVFEIIS
NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA
SIQSILTQETPGVASLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSAIMTDI
ITLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVQELSKELRK
VVDEKTVLMNYMGIHAGVCLHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEG
RQTERCEKSPCPINGGWGPWSPWDTCSVTCGGGVQNRKRLCNDPIPKYGGKDCVGDAKAS
QLCNKQACPIDGCLSNPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDINECEEVPDT
CFEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFSDPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYQCKKDNC
PNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCP
YNSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDFDGVGDQCDNCPL
EHNPDQLDSDADRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDD
DNDGIPDDKDNCRLVSNPDQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaactgctatctttttgctactgatgctttggaactgcgagagcgcgagagtc
gcagaaagtcgagacgacaacagtgtttacgatctgtttgagctcgtccaagtgccgagg
aaaaaccacggggtcaccctggtgaaaggcgacgacccgtacagccccgcctacaagatc
ctgaaccccgacctgatccccccggttcccgagagcgccttcagggacctaatcgattcc
attcacgccgagagaggatttctgctcctggtcaatttcaagcagttcaagcacacgagg
ggaagccttctgaccgtggagaagaatgacggctccggacccgttttcgaaatcatttcc
aacgggaaagccaacactctggacattgttttttccactgaaaacaagcaacaggtcgtg
tccatcgaagaagcggatttggcggtgggacactggaaaaacatcactcttttcgtgcag
gaggacagggttcagttctatgtgggatgtgaggaggtgaatacagcggagctcgatgct
tctatccagtcaatcctcactcaggagaccccaggggtggcgagcttgaggatcggcaag
ggcgcagtgaaggacaggttcatgggggtgctgcaaaacgtgcgctttgtgttcggaaca
actctggatgcgattctgaggaataaaggatgccaaaactcagcaattatgactgatatc
atcacccttgacaatcccataaatggatccagacctgcaatcaggactgattacaccggc
cacaaaacaaaagatctgcagatgatttgtggcttctcatgtgaggacctggctggcatg
ttcaaggaactgaaaggtcttggtgtggtggtgcaagaactgtccaaagaactccgcaaa
gtggtggatgagaaaaccgtgctcatgaattacatgggcattcatgctggtgtctgtctt
cacaatggaattgtgcacaaaaacaaggatgaatggacggtggatgattgcacagagtgc
acttgccagaactctgcaacggtgtgccgcaagatttcatgtcccctgatcccgtgtgca
aacgccacagtgcctgatggggaatgctgccctcgttgtggaaccccgagcgactccgct
gaggatggctggtccccctggtctgaatggacccattgttctgtgtcctgtggaaggggc
attcagcagcgcggccgctcttgcgaccgcatcaataacaactgcgagggcacgtctgtg
caaacgagagactgctacctccaggagtgtgacaagcgctttaagcaagatggcagctgg
agtcactggtcaccctggtcctcctgctcggtcacctgtggtgctggcgttatcactcgc
atccgtctctgcaactccccaacacctcagatggaaggcaaagattgtcagggtgaaggt
cggcaaactgagaggtgtgagaaatcaccatgtccgatcaatggcggctggggaccatgg
tcaccctgggatacttgctccgttacctgtggcgggggcgtccaaaatcgtaagcgtctt
tgcaatgacccaatacccaagtatggtggcaaagactgcgtaggagacgcaaaggccagc
cagctttgcaacaaacaagcctgtccaattgatggatgtctttcaaatccatgctttgaa
ggagcccagtgtacaagcttcccagatggctcttggaaatgtggaaaatgccccacagga
tacactggcaatggaatcaactgcaaggatatcaatgagtgtgaggaagtccctgacacc
tgctttgaatttaacggagtccataggtgtgagaacacagtgccaggctacaactgcctg
ccatgccccactcgctacaccggcccacagccatttggtcgaggagtggaagatgctgct
gccaagaaacaggtgtgcacgcctcgtaatccctgcctcgatggaagccacgactgcaat
aagaacgctcgctgcaactacctgggccatttctcagaccctatgttccgatgtgagtgc
aaacctggctttgctggaaatggacacatctgtggagaggacactgatcttgatggctgg
cctaatgctgatcttgtgtgtgtcgagaacgcaacctatcagtgcaaaaaggacaactgc
cccaatcttcccaactctgggcaagaggactatgacaaggatggaattggtgatgcttgt
gatgatgatgatgacgatgatggcattcctgatgacagggacaactgcccactcatcttc
aacccaagacagtacgactatgatcgcgacgacgtgggagaccgctgtgataactgtccg
tacaacagtaacccagaccagactgacacggacaataatggtgaaggtgacgcctgtgct
gtggacattgatggagatggtattttgaatgagaatgacaactgcccatatctgtacaac
gtcgaccagaaagacaccgatttcgatggagttggtgatcaatgtgacaactgccctctg
gaacacaacccagaccagctcgactctgatgcggaccgtgttggagacaaatgtgacagc
aaccaggatatcgacgaggacggccaccaaaacaacctagacaactgcccgtacatccct
aatgcgaaccaggccgatcacgacaaggatggtaaaggagatgcctgtgactatgatgat
gataatgatggcatccctgatgacaaagacaactgcagattggtttctaatccagatcaa
ctggattctgatggcgatggacgtggtgatgcctgcaaagacgactttgaccaggacaat
gtcctagatatctatgatgtgtgtcctgagaactttgacattagtgaaaccgacttccgc
aaattccagatggtacctctggatcccaagggcacttctcagattgaccccaactgggtg
gttcgtcaccaaggaaaagaactggttcagacagtcaactgcgaccccggcattgctgtt
ggttttgatgaattcaattcagtcgacttcagtggaacgttcttcatcaacacagagagg
gatgatgactacgccggctttgttttcggataccaatccagctctcgcttctacgtggtc
atgtggaaacagatcacacagacctactggtccagcacacctaccaaggcacagggttac
tcagggctgtcaatcaaagtggttaattccaccacagggccaggcgaacatctgaggaac
gccctctggcacaccggagacactccaggacaggtgcgcacgctgtggcatgacccgaag
aacgtgggatggaaggacttcactgcttacagatggcacctgacgcatagaccaagaact
ggacatataagagtggtcatgtatgaaggcaaaaaaatcatggcagattctggcagaatt
tatgacaaaacatacgcaggcggaagactgggtctctttgtcttctcacaagagatggtg
tacttttcagacctcaaatacgaatgcagagatgcgtaa
DBGET
integrated database retrieval system
