Chanodichthys erythropterus (predatory carp): 137020260
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Entry
137020260 CDS
T10334
Symbol
pcdh15a
Name
(RefSeq) protocadherin-15a
KO
K16500
protocadherin-15
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
137020260 (pcdh15a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cery03037
]
137020260 (pcdh15a)
04515 Cell adhesion molecules [BR:
cery04515
]
137020260 (pcdh15a)
Cilium and associated proteins [BR:
cery03037
]
Primary cilia and associated proteins
USH complex and associated proteins
137020260 (pcdh15a)
Cell adhesion molecules [BR:
cery04515
]
Cadherins
Protocadherins
137020260 (pcdh15a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Cad99C_N
Cadherin_2
CDH23_a-b
SpuA_C
Motif
Other DBs
NCBI-GeneID:
137020260
NCBI-ProteinID:
XP_067241639
LinkDB
All DBs
Position
5:complement(35613118..35893461)
Genome browser
AA seq
1711 aa
AA seq
DB search
MRRSWWRSGCLGLAIGLFVIITQILAQNTEECKLSRSGPPATIVTIDEESPNGTVLVENM
QINGRAQDPDRTISLTLLDNYDYWVILDPALQRLYLNSTGRVLDRDPPSYITTIVVQIQC
TNELVGTVILHEVRIVVRDRNDNTPRFQQPRYYVSVNELTPVGTTIFTGFSGNNGATDID
DGPNGQIEYAIQYNPNDPLSNRTVRVAGTLSGNIVLAERLNYEERTRYLIIVQANDRAPF
PGSRRTATTTLTLDVSDGDDLGPMFLPCVLVNNTHDCNPITYRVAIPELTDPSKLNPLNV
TPPIRAIDQDRNIQPPSDRPGILYFILVGQPSAYPEFFSLNRSTAELRLLKPVDRELYQR
FTLVIKAEQDNGHPLPAYAELQIEILDENNQAPYFQRPSYQGFISESASVGTTISGSSNL
TAPLGIIALDNDIEETKDPQLKITLNDYTSIFTITSAGITRYITLLKPVDRERQTNYTLT
LVASDGVQQSRPVTVDILVIDANDNTPTFAQVSYSVEIFTNMLPGETVLQLTAQDADAGL
NGLITYAILAGDQGDFIINNRTGRITLAPGVSLTVGRSYALTVRAADNAPDLERRSSITT
VYIEVLPPNNQSPPRFPLQTYNLEISEAMRIGAILLNLQATDRELDPITYQINSGDPQQV
FNLSRTIGLLLLAKPLDRETIDQYRLIVTASDGQPGGTSTATVSIVITDVNDNDPTFDLT
LPRNLTVKEEEANVFVGQVRATDPDAGLNGQVRYRLLTFASLFTINATGSIFTAVPLDRE
TRSRYDLIVEASDGAVDPRRTTITLLVEVTDINDNSPVFSQPTYTVNVQENTPGGTIILR
LSATDADLISNVTYRIKTEAARQLFAVNRLTGAISVLQAVDFEELAAGNSTYTFEVEALD
HGGVLPPGTATVIVRITDMNDFSPVFRQALYKGMVAPNAEKGTVITVVFAEDQDPPGTPA
SKVRYRVDQDLSPYSGSIFDVETDTGRVITKVNLNEQPNTVFKLVVIAYDDGEPVKINRT
TVEITVLQPSRIPIFTEEEYRFSPVSENAPVGTPVGLILAVAVNTTVFYSIVSGNDGGEF
RVNNRTGIIYTNKSLDYEKVTSYVLRVQADSLDIILANLRVPSKTNTAKVFIDVQDENDH
PPVFTRSLYIGGVTEDTKTFTTVLKVVATDIDTGNYSKMAYRLIIPPTPEGQDSFVIEPY
TGVIKSAIMFRNMRRSYFKFQVIATDNYGQGLSSRADVVVSVVNALDMQVVVSNVPPTVV
EENKEQLISILERYVQDQIPGAKVIVESIGPRRHGEGYELEDYSKSDLQVYAIDPLTNRA
ISRQELFKFLDGKILDINKEFQPYLGEGGRILEIRSPDIVASVKKAAQAVGYTEGALLAL
AIIIILCCIPAILIVMVTYKQFKERQAECAKTARIQMSLPTAKSTGGVAPTNLYEELGDG
GIKGESTRSGRGFGREALSMESGIDPGQDYYSQDYYSYDQGYDPYPPYGSRRRLITPMYD
EYGEAIIEDEAYYYGGPEAGKKKRVKLVLDREHDTTSTGEDSGPDVQRNRIPNVSSHSNI
NGSVYLAQNGTIIRTRRSPYPNNLKLGSPTRLGKQFKKLDKLGVTHEEHLPLNGTEDNGP
IIGTTTAHSYVTDHNLNSKECSIMGLNSIGPKSNIDKARLEQDRGHCEQESSVDNREIKE
SVESPCEQTLSDEEELWMGPWNNLHIPMTKL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggagctggtggcgatcgggctgtctgggtttggcgattggcttgtttgttatc
atcacccaaatcttggctcaaaacactgaagagtgtaagttgtcacggtcaggtccacct
gccactatcgtcaccattgatgaggaaagtccaaatggtaccgttctagtggaaaacatg
cagatcaacggtcgtgcgcaggatccagatagaaccatctcattgacgctgctggacaac
tatgattactgggttatccttgaccctgcactgcagagactgtatctcaacagcaccgga
cgagtgctggaccgtgacccgcccagttacatcaccaccatcgtggttcagattcagtgc
accaatgaactggtgggaacagttattctgcatgaagtgcggatagttgtgagggacaga
aatgacaacacgccacgtttccagcagcctcgttactatgtatcagttaatgagctcact
cctgtcggtaccaccatcttcaccggcttctcaggaaacaatggagccacggatattgat
gacggaccaaacggacagattgaatacgccattcagtacaacccaaatgacccgttgtca
aacaggaccgtgcgggttgctgggactctgtctggtaacattgttttggcagagcggctg
aactatgaggagagaactcgctatctaattatagtccaggccaatgaccgggctccgttt
cctggaagtcgtcgcacagcaaccactactctaactttggacgtttcagatggagatgat
ctaggtcccatgttcctcccttgtgttctggtcaacaacacacatgactgtaaccccatc
acataccgtgtcgctattcctgagctcactgacccgagcaaactgaaccctctgaatgtg
actcctcccattcgagccatagaccaggacagaaacatccagccgccctcagacagaccc
ggaatcctgtacttcatactagttggtcaaccttctgcgtatccagaattcttctcactc
aacagaagcacagctgagctgcgcctgctgaagcctgtggacagagagctttaccagcgc
ttcactctcgtcattaaggccgagcaggataacggtcaccctcttcctgcatatgctgaa
ctgcagattgaaattcttgacgagaacaaccaggcaccatattttcagcggccctcatac
cagggcttcatcagtgagtcagcctcggttggcaccaccatctcagggagctccaacctc
acggctccgctgggtatcatagcactggacaatgacatagaagagacaaaagatcctcag
ttgaagatcactctgaatgactacacctccatcttcaccatcacgtctgctggcatcaca
cgttacatcaccctgctaaaaccagtggaccgagagagacagacgaattacactttaacg
ttggtggcctctgatggtgttcaacagagcagacccgtgacggtggacatcctggtcatc
gatgctaatgacaacacgcccaccttcgctcaggtgtcctacagtgtggaaatcttcact
aatatgctacctggagagaccgtcctgcagttaacggctcaggatgctgatgctggttta
aacggtctcatcacatacgccatcctggctggagatcagggcgatttcatcatcaacaac
cgcactggacgaataacgttagcaccaggggtctcgctgactgtcggccgttcctacgca
ctgaccgttagagcggcggacaatgctccagacttggagaggaggagctccataactacg
gtttacatagaggttctgccgcccaacaatcagagtcccccacgatttcccctacagacc
tacaatctggagatcagtgaggccatgagaataggagccatactgctaaacctgcaggct
acagaccgtgagctggatccaatcacttaccagataaacagtggtgacccgcagcaggtg
ttcaacctttcacgaactataggtcttctgctgctggccaaacctctggacagagaaacc
attgaccagtatcgccttatcgtcactgcttctgacggccagccaggagggacttcaact
gccaccgtcagcattgtcatcacggatgttaacgacaacgaccccacctttgacctcact
ttacccagaaacctgacagtgaaggaggaagaggccaatgtgtttgtgggtcaagtcagg
gccacagatcctgatgccggactcaacggtcaggtccgataccggctgctcacttttgcg
tctctgttcaccataaacgccacgggcagcatcttcacagctgtcccgttggacagagag
actcgcagccggtacgatctgatcgtggaggcgtcagatggggcggtcgacccccgcagg
accaccatcacgctgctggtggaggtgacagacatcaatgacaacagccctgtgttttcc
cagcccacctacacagtcaacgtccaagagaacaccccgggtggaaccatcatcctgaga
ctcagtgcaacggacgccgatctcatctctaacgtgacctacagaataaaaacagaagcg
gctcggcagctcttcgccgtgaaccgtctgaccggcgccatatcagtcctgcaggcagta
gactttgaggaattggcagcaggaaacagcacctacacgtttgaagtggaggcgttagat
cacggtggagttctccctcctggaacggccacagtcatcgttagaatcacggatatgaat
gatttctccccggtcttcagacaggctctttataaagggatggtggctccaaatgcagag
aaggggacagttatcacagttgtgtttgcagaagatcaggatcctccaggtacgcctgcc
agtaaagtgcgctacagagtggatcaggatctgtcaccgtacagtggaagtatctttgat
gtagaaacggacacaggacgagttatcaccaaagtcaacctgaatgagcaacccaacacc
gttttcaagctggtggtcatcgcctatgacgatggagagccggtgaagattaacagaacc
acagtggaaatcactgtgcttcagccctccaggattcccatcttcactgaggaagagtac
aggtttagtccggtgagtgagaatgctcctgtcggaacgcctgtgggattgattctggcc
gtagctgtcaacaccactgtcttttactctatagtgagcggaaacgatggaggtgagttc
agagttaataaccgcactgggatcatctacacaaataaatctctggactatgagaaagtg
accagttatgtgctccgggtgcaggccgattcccttgacatcatcctcgccaacctacgc
gttccctccaaaacaaacacagctaaggtatttatcgacgttcaagatgagaacgatcat
ccaccagtcttcacaaggtctctttacattggaggtgtgactgaagacactaagaccttc
accacagtactgaaagttgtggctacagatatcgacacaggaaactacagtaagatggcc
tacagactgatcatccctcccactcccgaggggcaggacagtttcgttattgagccgtac
accggcgtcatcaagagcgccatcatgttcagaaacatgcgaaggtcctacttcaagttt
caggtcatcgccacggacaattatgggcaggggctgagcagcagggctgatgtggtggtc
tctgttgtgaatgccttggacatgcaggttgtggtctctaacgtgccgcccactgtggtg
gaggagaataaagagcagctgattagtattttggagcgctatgtgcaagatcagatccct
ggtgctaaagtgatagtagaatcgattggcccacggcggcatggagaaggttatgaactt
gaagactactccaaatcagacctgcaggtgtacgccatcgaccctctcaccaacagagct
atctccagacaagagctcttcaagttcctggacgggaagattctggacatcaataaagag
ttccagccgtacctgggtgagggcgggcggattctggagatccgttctcctgacattgtg
gcgagtgtgaagaaggctgcgcaggcggtgggctacacagagggggcgctgttggcactg
gccataatcatcattctgtgctgcatccctgctattcttattgtcatggtgacatacaaa
caattcaaagagaggcaggccgagtgtgccaaaaccgcccgtatccagatgtcacttcct
accgccaaatcaacaggaggtgtggctccaaccaatctctacgaggagctgggagatggc
ggcataaaaggagaaagcacacgttctgggcgtggctttggcagagaggctctctccatg
gaatcaggtatcgatcctgggcaggattattattctcaagactactatagctatgatcaa
ggatatgatccctatccaccctacggtagccgcaggaggctgatcacacccatgtatgat
gagtatggagaggccatcatagaggatgaagcatattactatggtggaccagaggctggc
aaaaagaagagggtcaaactggtgttggacagagagcatgacacaacttcaacaggagag
gatagtggaccggatgtccaacgcaatcgcatacccaacgtcagcagccacagtaacatc
aatggatcagtataccttgcccaaaatggtaccatcatccgaacacggaggtccccttac
cccaacaacttaaaactgggctcaccaacacggttaggcaaacagtttaaaaaactggat
aaactaggtgtcacacacgaagagcatttacctttaaatggaacagaagacaatgggcct
attatcggcaccaccactgcccattcctatgtcactgatcacaacctcaactccaaagag
tgcagtataatgggccttaacagcatagggcccaagtccaacatcgataaagcccgcttg
gagcaggatagggggcactgtgagcaggagtcctcagtggacaacagggagattaaagag
tcggtagaatctccgtgtgaacaaacactgtctgatgaagaggagctctggatgggtccc
tggaacaacttgcacataccaatgacaaaactctga
DBGET
integrated database retrieval system
