Chanodichthys erythropterus (predatory carp): 137020816
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Entry
137020816 CDS
T10334
Symbol
slit1a
Name
(RefSeq) slit homolog 1a
KO
K06838
slit 1
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cery00536
]
137020816 (slit1a)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Axon guidance molecules
137020816 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRRNT
LRRCT
EGF_TEN
LRR_1
LRR_14
LRR_9
EGF_Teneurin
EGF_DL_JAG
EGF_3
Motif
Other DBs
NCBI-GeneID:
137020816
NCBI-ProteinID:
XP_067242992
LinkDB
All DBs
Position
5:complement(31458285..31555181)
Genome browser
AA seq
1526 aa
AA seq
DB search
MPARGGYSVGRLVEACIRILLLCEAATACPALCTCSGTTVDCHGLGLKTMPRNIPRNAER
LELNGNNLTRINRNDFSGLKYLRVLQLMENQIGTVERGAFDDMKELERLRLNRNQLHQLP
ELLFQKNAALSRLDLSENFIQAIPRKAFRGATDIKNLQLDKNHISCIEDGAFRALRGLEV
LTLNNNNISGIPVSSFNHMPKLRTFRLHSNNLNCDCNLAWLSQWLRERPTIGLFTQCSSP
APLRGLNVAEVQKHEFSCSGQSESVAVQSCSLATGSCPAVCTCSNNIVDCRGKGLTAIPA
NLPDSMAEIRLEQNGIKSIPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLY
GNKITDLPKGVFDGLYALQLLLLNANKIHCLRANTFQDLQNLSLLSLYDNKIQALAKGTF
TSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCTSPRRLANKRIGQIKSKKF
RCSAKEQYVIPGTEDTRLNNDCNNDPVCPAKCRCESNVVDCSNLRLNRIPEHIPASTTEL
RLNNNEITTIEATGVFKTLSHLKKINLSNNKISEIEDGAFEGASSVNELHLTANQLDSAH
SGMFRGLDGLRMLMLRNNRISCIHNNSFTGLHNVRLLSLYDNTLTTITPGAFDTLQSLST
LNLLANPFNCNCHLAWLSSWLRNRKIVTGNPRCQRPAFLKEIPLQDVALPDFRCEDDQEE
ASCTPPIQCPAECTCLETVVRCSNKHLRLLPKGIPRNVTELYLDGNQFSAVPKELSNFKN
LQLVDLSNNKISSLTNSSFSNMSQLTTLILSYNALRCIPTLAFGGLQSLRLLSLHGNDIS
ELPDGIFNDAASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCIGPHGMEGKLLL
TTPAKRFECQGEVDTAILAKCNPCMSGPCLNHGSCEADQTDGYRCSCSEGFKGKNCETVT
NACVSEPCKNGGTCHTFGEEEEDFSCSCAAGFEGPTCDTDIDECKDNDCQNGATCIDGIN
NYTCLCAPFYTGEMCEDMEDMCASTRSPCKHQSTCFITVTGPKCICAPGYVGDDCSVNYD
DCKDHRCQNGAQCVDEVNGYSCVCPKGFSGQLCEVPSTPRSLCELADCQNNAPCVERGGH
PLCQCLAGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDNGILLYNGD
NDHIAVELHEGHVKVSYDPGSQQSHAIYSTETVNDGQFHTVELVTFDQMVNLSIDGGIPT
TMDSFGKVQPLRGEAPLYVGGMPVSVHPTAPRVWQIQNGSSFHGCIQNLYINNELQDFTK
TQMKPGVVPGCEPCRKIYCLHGICQPNTATGPVCHCQPGWSGQHCDQPSVNPCLGSKCVH
GRCIPMDMQSYRCECQEGFHGALCNQQEELFNPCRRLQCKHGHCQISDTGDAYCHCEVGY
SGELCDKESECHGEPVRDFYQVQRGYAICQTTRMVSWVECSGACDTGSCCASQRMKRRKY
TFECSDGTSFSEEVEKTIKCGCVGCM
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgagaggaggatactctgtaggcaggctggtggaggcgtgcatccggatactg
ctgctgtgtgaggctgccacggcgtgtcctgcgctctgcacttgcagcggcaccacagtg
gactgccacgggctggggctcaaaaccatgcccaggaacattcccagaaacgcagagagg
ctggaactgaatggaaacaacctcacacgcatcaacagaaatgacttttctggactcaag
tatcttcgagttttgcagctgatggagaaccagattggaacagtggagcgcggagcgttc
gatgacatgaaggagctggagagactacgtctgaacaggaaccagcttcaccagcttcca
gagcttctgtttcagaagaacgcggctctgtccagactagacttgagtgagaacttcatc
caggcgattccccgaaaggccttcagaggagccacggacatcaagaaccttcagttagac
aagaatcacataagctgcatcgaggacggtgctttccgtgcgttacgtggcctcgaagtt
ttaacactgaacaacaacaacatcagcggcattccagtgtcgagcttcaaccacatgccc
aagctcaggaccttccgtttacattcgaacaacctgaactgtgactgtaatcttgcctgg
ttgtcgcagtggttgcgcgagcggccgaccatcggtctgttcacccagtgcagctctcca
gctccgctacgaggacttaatgtagccgaggtccagaaacatgaattcagctgttcaggt
cagtctgagagcgttgcggttcagtcgtgtagtttggccacaggctcgtgtccggccgtc
tgcacctgcagtaataatatagtggactgcagagggaaaggactgacagcgatcccagcc
aacttgcccgacagcatggcggagatacgactggaacagaacggcatcaaatccattcct
cccggagccttctctccttataagaaactgcgccgaatagatctcagcaacaaccagatt
tctgagattgctccggacgccttccagggcctgcgctccctaaactcactggttctgtac
ggaaacaagatcaccgatctgcccaaaggagtgtttgatggactctacgccctccagctg
ctgcttttgaatgcgaacaagatccactgtcttcgtgcaaacacctttcaggacctgcag
aatctctcgctgctttctttatatgacaacaaaatccaagcgctggccaagggcaccttc
acctcgctgcgcgcaatacagacccttcatttggctcagaatccgttcatctgtgactgt
aatctcaagtggctggccgattacctgcgctccaaccccatcgagaccagcggagcccgc
tgcaccagccctcgccggctcgccaacaaacgcatcggccagatcaagagcaagaagttc
cgctgctcggccaaagagcagtacgtcatcccgggaacggaggacaccagactgaacaac
gactgtaataacgaccccgtctgtcccgccaaatgccgctgtgagtctaacgtagtggac
tgttccaatctgagactaaaccgcatccctgagcacatcccagcatccaccactgaactc
cgtctcaacaataacgagatcacgacgatagaagccacaggtgttttcaagacgctctct
cacctgaagaaaataaacctgagcaacaataagatctctgagatcgaggacggggcgttc
gaaggggcgtcttcggtcaacgagctgcacctgacggcaaaccagctggattcggcgcac
agcgggatgttccggggtctggacggcctgcggatgctaatgctgcggaacaatcgcatc
agctgcattcacaacaacagcttcacgggcttgcacaacgtccgtctgctgtccctgtac
gacaacacgctgaccaccatcacgcccggagccttcgacacgctgcagagcctctccacc
ctaaacctgctggccaacccgttcaactgcaactgccatctggcctggctgagcagttgg
ctgaggaaccgtaagatcgtcacggggaacccgcgctgccagcggccggccttcctcaaa
gagattcccctgcaggacgtcgcattaccagatttccgctgcgaagacgatcaagaggaa
gcgagctgcacgccgcccatccagtgtcccgccgagtgcacctgtctggagacggtggtg
cgctgcagcaacaaacacctgcgcctcttacccaaaggcattcctcgcaacgtcaccgag
ctgtacctggatggaaaccagttcagcgcagtgccaaaggagctgtccaacttcaaaaac
ctgcagcttgtagacctgagcaacaacaagatcagttccttgaccaattcttcgttctcc
aacatgagtcaactcactaccctgatcctgagctataacgctcttcgctgtatcccgact
ctggccttcgggggtcttcagtctctccgcttgctgtcgttgcatggcaatgacatctca
gagctgcctgatgggatcttcaacgacgctgcatcactgtcacatctggccatcggtgca
aaccctctgtactgcgactgccgcctgcgctggctctcagactgggtgaaaaccggctac
aaggagcctggcatcgcgcgctgcattgggccgcacggcatggagggaaaactgctgctg
accacccctgccaagaggtttgagtgtcagggtgaagtggacactgcgatactggcgaag
tgtaacccgtgcatgtccggcccctgtctgaaccacggcagctgcgaggcggatcagacg
gacggatacaggtgcagctgctccgagggttttaagggcaagaactgtgagacggtgact
aacgcttgtgtcagtgagccctgtaagaacggaggaacatgccacacgttcggagaagag
gaagaagactttagctgttcatgtgctgcaggctttgaaggacccacgtgtgacactgat
attgacgagtgtaaagataatgactgtcagaacggagcgacctgcattgatgggatcaac
aactacacatgtttatgtgcccctttttacacaggggagatgtgtgaggatatggaggat
atgtgtgcttctactcgcagtccctgcaagcatcagtcaacctgcttcatcacagtcaca
ggcccaaagtgtatatgcgcacctggttatgtgggtgacgactgcagtgtgaactatgat
gactgtaaggaccacaggtgtcagaatggggcgcagtgtgtggacgaggtcaatggatac
tcctgtgtttgcccgaagggcttcagtggacagctttgtgaagtcccatctactccgcgc
tctctctgcgagttggctgactgtcagaacaatgccccctgtgtggagcgggggggtcac
cctctgtgtcagtgcctggcagggtttggaggaccacgctgtgaaaagttggtcagtgtc
aactttgtggaccgagactcctacctgctactgagtgacctgaagaactggcctcaggcc
aacatcacactacaggtgtccacagcagaggacaatggcattcttctgtacaatggagac
aatgaccacattgctgtagaacttcatgaaggtcatgttaaagtcagctatgaccctggc
agccaacaaagtcatgcaatctacagtactgagaccgtcaatgatggtcagttccacact
gtagaactggtgacctttgaccagatggtgaacctttccatagacggcggcatcccaaca
accatggacagctttggtaaagtgcagccactgaggggagaagctccactatatgtggga
ggcatgccggtcagcgtccaccccactgctcctcgtgtgtggcagatacaaaacggctcc
agtttccacggttgcattcagaacctttacatcaataatgagctacaagacttcaccaaa
acccagatgaaacctggtgtggtgcccggatgcgagccctgccgaaagatatactgcctc
catggcatctgccaacccaacaccgccacgggccccgtatgccactgccagcccggatgg
agcgggcaacactgtgaccagccttcggtgaacccgtgtctgggcagcaagtgtgtccat
gggagatgtattccaatggacatgcagtcgtaccgctgtgaatgccaggagggttttcat
ggtgccctgtgcaaccagcaggaagaactcttcaatccgtgcagaaggctacaatgcaaa
catggtcactgtcagatatctgacacaggagatgcctactgtcactgtgaggtgggctac
agtggggagttatgcgacaaggagtccgagtgccacggggagccagtgcgggacttctac
caggtccagcgagggtacgccatctgtcagaccacacgcatggtgtcgtgggtggagtgc
agcggtgcctgcgacaccggctcctgctgcgccagccaaaggatgaagcgcaggaaatac
actttcgagtgcagcgacggcacgtccttcagcgaggaggttgagaagaccatcaagtgt
ggctgcgtggggtgcatgtag
DBGET
integrated database retrieval system
