Chanodichthys erythropterus (predatory carp): 137030034
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Entry
137030034 CDS
T10334
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cery03036
]
137030034 (smchd1)
03400 DNA repair and recombination proteins [BR:
cery03400
]
137030034 (smchd1)
Chromosome and associated proteins [BR:
cery03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
137030034 (smchd1)
DNA repair and recombination proteins [BR:
cery03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
137030034 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
SMC_hinge
HATPase_c_3
HATPase_c
DUF2861
WHD_NOD2
Motif
Other DBs
NCBI-GeneID:
137030034
NCBI-ProteinID:
XP_067256087
LinkDB
All DBs
Position
11:complement(50693153..50771668)
Genome browser
AA seq
1984 aa
AA seq
DB search
MCDETNMIEAGTERDRSKKPSKSVCVYDCRPDRSDALARTLDIANVDYNGFLQALKQLFS
LSTNETFVISTTDRREIDEELYKELVDGKTLHLLKSVNQELSVATQERIEYLPHYHTLVQ
CGMYEYYASEGQKALPYAFAELIDNALSATAKNTGIRRIEIRLLFDESQGGPAVVVMDNG
CGMTSKQLNNWAVYRLSKFIRENDMFHSEKPGYERPSPVPRSLNSDISYFGVGGKQAVFY
IGQSVRMISKPAGSPDVHEFVMSKEDFERKELNREDIYSGFIRNRKPGDFSHVNVIEEQF
LRSIVIEEDGKESFTAVVITGIQPEHVVYLKQYFSLWTRELAHTYHYYIHGIDGNDKRKM
RKTDHFSNIDIQISLFERSPRIPAVVNLRDVDNDMQTLYVSSSASTFEFKAIGARDSLVE
GLIRYHPFLYDRETYPVDPYAASAGPLEDEDEDCVVLNSEGRGKQPIFECFWNGRLIPYT
SVSEFEWCKRPKKPGAVPPECYNRISGVLFANDRFQVSTNKLTFMDLELQLRDKETIFTR
VHNGQEQRVKIEREFTNWLKDCHERFDKQVMFQGFQGLMTREDVPKRLQSPWATFQAIKW
DGKTYKKGQFVKSVKTQPILFGSVVQFLLYGDFEDDVYATGGHVQIALEPKDLYDEQRII
PIFKIDRQATAKAIKEHIENELAKLPERLKVTWPKGNDWAEKDARPAGTPFGPIKVDILN
KNGETMSRLPVAGNSKKLSVDLKIIWHSPKGDVHINSFIGVHSAKWEYWFKAMENLTKLG
MYTLHLQAVLSDSHSNEWAGKRLPNYTLNFSIKEGEAVSFMLDMISPVHVGVPFNIPLNF
RDEFEYPTQPPCDIKPQLECSSLKLSYEGIVFGTTSVIRNVRAMGKLSLQSKMYTLKVLI
PGLKQNNQSLQIFLQPGPPHTLLVFPDEDVLSVENGTPANFRVEVHDECQNITTHPKLTV
RCQLLGAPDLPVDVVDCSNTGSGLMLTKPLLLKTVNPEQIFTAKFNIPNNRTVACVERQL
RILPSSRISRLEVYRQEEGSDDVMVIQNSERIDWTAGDTLGSLHFRLYDEGNRLVSLQPK
LTSKIKVNWTAELNAEELSQGKLPHLCVPSQAQREHFCNVSFHDQHTVNMSFIIVPRPDE
PERLRVNLSESTVKMGEILSGNTYVEVIDQYGNKTDCLNAESVKTLSVSADDLDKEALAI
EWKASIGRLSVSGVRFKAGSLGPRELCFKYQEMKEFVRIEVTAGPPAKIILLEKPEIPFQ
VINGHGLDTPLVMQLCDEWGNPSPDQRVEIGMRNLSSQIKVKSSVMSQPVDSEGKACFIL
ERIIGAKGEHHLEFLGSFSRKGIPGPLIRLNVIPDPNKPVKLCIEYDSAATLCAGGVFPV
FTVVVMSEEGGPVRNISPANLSMLLWKSIASGSCPPAEATTLKCSKRKDTEKDECFCFRE
KQIPELAGKYVVQFVLALDKTKCLWSKQIALNVVPNKATKLAPETPPSTPVVSNSNIRAN
RTLLDSLNLKIMDQYDNAAGEGIDGKVVVTVEGPGDIVVPLFQNGDKRLSYSLTNGESLI
TDLVLLENSPGVDGAEYRLQFLPEIHKTSVTIAPYSLPFRFCNDAEYQKVVANLSKKKDS
LSRTILMYKEFFETNEELKSELQRQVQDATHKQNELKPELMKSGLDISELTTESAIEKVI
NAKKAILTKMEVQPRRKCSIPDPFKGSPHVLGKVAHLAQVEDDDAAKVISWHILGDMDCV
VTETTSAAKKIYDDTQGRQQVIPLETVFWRQNDRPLPHIRNGSPLFHPPGNPVFVKDLLI
FPEHAESCNKVFATLLGDTILIDDLDSANDYRREVVQNKMQCPTLLTRQGERIRSNGKFG
GLQNKAPSIEKLRGQVFGAPLPKEYHHICHQIGLLQQYCVAMKKASDVRSEYNSHVENLQ
SPQMKRKRQELNQQREELKELEKSLTRTPEKMYAAREKRSLEPETPEASVPPKRIRRKSC
KLDS
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgacgaaacgaacatgatcgaggccggaacggagagagaccggtcgaaaaagcca
tcgaaatcggtgtgcgtgtatgactgccgaccggacagaagcgatgcgctggcgcggaca
ctagacatcgcgaacgtcgattacaatggctttctacaggctctgaaacagttgttttca
ctgtcgacaaacgagactttcgttataagcacgacggaccgaagagagattgacgaagaa
ctttacaaggagctggtcgatgggaaaaccttgcaccttttgaagtctgtcaatcaggag
ctgtctgtggcgactcaagagcggattgagtatctgccgcactaccatactctagtgcaa
tgtggcatgtatgagtactatgctagtgaaggacagaaggcgttgccctatgcttttgct
gagcttattgataatgcactgtcagccacagcaaaaaacacgggaatcaggagaattgaa
atcagattgctgtttgatgagtctcagggaggacctgctgttgtggtgatggataatgga
tgtggaatgacttctaaacagctgaacaactgggccgtttaccgtctgtcgaagtttata
agagaaaatgacatgtttcatagcgaaaaacccggttatgagagaccaagtccagttcca
cgcagtctgaacagtgacatctcatattttggagtcggaggcaaacaggctgtgttctac
atcggccagtctgtcagaatgatcagcaaacctgcaggttctccagatgttcatgaattt
gttatgtctaaagaagactttgagcgcaaggagttaaacagggaagacatttactctggc
ttcattagaaacaggaagcctggggatttctcgcatgtgaatgtcattgaggagcagttt
ttgcggtctattgtgattgaagaagatggaaaggagagtttcactgcagttgtaatcact
ggaatccagccagaacacgtcgtctacctcaaacagtatttctctctgtggaccagagaa
ttagcgcatacttaccattattatatacatggaattgatggaaacgacaagagaaaaatg
agaaaaaccgaccatttctccaacattgacattcagatcagtttgtttgaacgttcccct
cgaatccctgctgtggtgaatctgagggatgtggataatgacatgcagactctgtatgtc
agctccagtgcttctacttttgaatttaaagccatcggcgctagagattccttagtggag
ggattgatccgttatcacccgttcctctacgatcgagaaacatacccagtggatccatat
gctgcttcagcaggtcctttagaggatgaagatgaagattgtgtagttttgaattctgaa
ggccgtggcaaacaaccaatctttgagtgcttctggaatgggcggctcattccctacacc
tctgtctcagagtttgagtggtgtaaaaggcctaagaaaccaggtgctgtgccgcctgag
tgctataaccggatttcaggagttctctttgccaatgaccggttccaagtcagcaccaac
aaactcacctttatggacctggaacttcagctccgtgacaaagagaccatttttaccaga
gtgcacaatggccaggagcagcgagtgaagattgagagggagtttactaactggttaaaa
gattgtcatgagcgatttgataagcaggtgatgtttcagggatttcagggcttgatgaca
cgtgaagatgtgcccaaacggcttcaatcaccctgggctacattccaagccattaagtgg
gacggcaagacttacaagaaaggacaatttgtgaagtcagtgaaaactcagcccatctta
tttggctctgtagttcagttcttgctttacggagactttgaagatgatgtgtacgccaca
ggaggacatgtccaaattgcactggaaccgaaggatttgtatgatgagcaaagaatcatt
cccatctttaagatcgacagacaagccacagccaaagccattaaggaacacattgagaat
gagcttgcaaagcttccagaacggttgaaggttacgtggcctaagggaaacgattgggct
gagaaagatgctcgtccagctgggacaccctttggtccgattaaggtggatatattgaac
aaaaatggagagacgatgtctcgactgcctgtggccggcaattctaagaaactgtcggtt
gacctgaaaatcatctggcactctcctaaaggagatgtccacattaactccttcattggt
gtgcattcagccaaatgggaatactggttcaaggccatggagaatctcactaagcttggg
atgtatacgctgcatctgcaggctgttctgagcgacagccactccaatgaatgggctgga
aaaaggctacccaattacaccctcaatttctcgattaaagaaggtgaagcagtatctttt
atgctagacatgatttctcctgtccatgtgggagttcccttcaatattcctctaaacttt
agggatgagtttgaatatcccacccagccaccctgtgacattaaaccccagctggaatgt
agttcactaaagttgagttatgaagggatcgtattcgggaccacttctgtcatcagaaat
gtgagggccatgggaaagctcagtcttcaaagcaagatgtacacactgaaggtgctcatc
ccagggctgaagcagaacaaccaatctcttcaaatttttctgcaacccggcccgccgcac
actctgctagtgtttccggatgaagatgtgctctctgttgagaatgggactccagcaaac
tttagagtggaggttcatgacgaatgccaaaatatcaccactcatcctaaactcacagtc
cgctgccagttgctgggagcccctgatctgcctgtggatgttgtggactgcagtaacact
ggctctggactcatgctgactaaaccactattgctgaagactgtaaaccctgaacaaatc
tttactgctaagttcaacattccaaacaacagaacagtggcgtgtgtggaacgtcagctg
cgcatcttgcccagctcacgaatatcccgtttagaggtctacagacaggaagagggctct
gatgatgtcatggtgatacaaaattcagagcgcattgattggacggcaggagacacacta
ggaagccttcacttcagactgtacgatgagggcaataggctggtttcccttcagcctaaa
cttaccagtaagattaaggtgaattggacagcagagttaaatgcagaagagctttctcag
ggaaaactgccacatttatgtgtcccatctcaagcacagagagagcatttctgcaatgtc
tctttccacgaccagcacacggtcaacatgtcgttcattattgtgcctcgtccagatgag
cctgagcgtttgcgggtcaacctcagcgaatcgactgtgaaaatgggcgaaattctttca
ggaaacacatatgtggaagtgattgatcagtacgggaataaaacagactgtctaaatgct
gaaagtgtgaagactttgagtgtgtctgcggatgacctggataaagaagctctggccata
gaatggaaggccagtattggaagattgtctgtatctggtgtccggttcaaggcaggatct
cttggcccaagagagttgtgctttaagtatcaggaaatgaaggaatttgtgcgaattgaa
gttactgctggacctccagcaaagataattctactggagaagccagagatacctttccag
gtcatcaacggccatggcttggacacaccattggtcatgcagctgtgtgatgaatgggga
aatccttcaccagaccagcgtgttgagattggaatgaggaatctgtcctcacagattaag
gtaaagtcttcagtgatgtctcagcctgtagattcagaaggaaaagcttgcttcatatta
gaaagaataattggtgcaaaaggggagcatcatttggaattcttgggatcttttagcagg
aaaggtattcctgggccattaataagactaaacgtgattcctgatcccaacaaacctgtt
aaactctgtattgaatatgacagtgctgccactttatgtgcaggaggcgtcttcccagta
tttacagtggttgtgatgtctgaagagggtgggccagtgagaaacatcagcccagcaaat
ctatcaatgctgctctggaaaagcatagcatcagggtcctgtccacccgctgaagccact
actctgaagtgtagtaaacgcaaggacactgaaaaggacgagtgcttctgcttcagggag
aagcagattccagagcttgcaggaaagtatgtagtccagtttgttttggctttggacaaa
accaaatgtctgtggagcaaacagattgcactaaacgttgttcccaataaagcaacgaaa
ttagcccctgagaccccaccctcaactcctgttgtctccaatagtaacattcgggctaat
cgcacactgctggacagcttgaatctgaagatcatggaccagtacgataacgctgctgga
gaaggtatagatgggaaagtggtggttacagttgaaggcccaggagacatcgtggttcct
ttgtttcagaatggagataaaagattgtcatacagccttactaacggggagtctcttatt
actgatttggttcttttggagaacagtcctggtgtggatggagctgagtacagactccag
tttcttcctgaaattcataagaccagcgttaccatcgctccatacagcctgcctttcaga
ttttgcaacgatgcagaatatcagaaagtcgttgcgaatctcagtaagaagaaagatagc
ctttccagaaccattttgatgtacaaggaattctttgagaccaatgaagaactgaaatct
gaacttcaacgtcaggtgcaagatgcaacccacaaacaaaatgagctcaaaccagagctc
atgaaaagtggcctagacatctcagaactaaccactgaatcagcaatagagaaagtaatc
aatgccaagaaagcaattttgaccaagatggaggttcagcctagacgaaaatgcagcatt
cctgaccctttcaaaggcagtccgcatgttctgggaaaggtagctcatctggcacaggtg
gaggatgatgatgcagcaaaggttatctcttggcatatcctgggtgacatggactgtgtg
gttactgaaacaacatctgctgccaagaaaatctatgatgatacacaaggacgacaacaa
gtcatacccctcgagacggtcttctggagacaaaatgacaggccactgcctcacatcagg
aatggctcgcctctcttccatccacctggtaatcctgtgtttgtcaaagatctgctcatt
tttcctgagcatgcagaaagctgcaataaagtttttgcaacccttcttggagacaccata
cttattgatgacttggattctgctaatgactatcgtcgggaggtggttcagaataaaatg
cagtgccccacgctcctaacgcgtcaaggggagcggatacgcagcaacgggaagtttggt
ggtctgcagaacaaagcgccgtccattgaaaaacttagaggacaagtgtttggagcacca
ttacccaaagagtaccaccatatatgccatcagataggtttattgcagcagtactgtgtt
gcaatgaagaaggcctcagatgtccggtctgagtataatagtcatgtggagaacctgcag
agtcctcagatgaaacgcaaacgacaagagctcaaccagcaaagagaagagttaaaagaa
cttgagaaatccctcaccagaactcctgaaaaaatgtatgctgcaagagagaagcggagc
cttgagcctgaaacgcctgaggcctcagtccctcctaaacggatccgtcgcaaaagttgc
aaactcgattcgtga
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integrated database retrieval system
