Chanodichthys erythropterus (predatory carp): 137032047
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Entry
137032047 CDS
T10334
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
137032047 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cery03400
]
137032047 (lig4)
Enzymes [BR:
cery01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137032047 (lig4)
DNA repair and recombination proteins [BR:
cery03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
137032047 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SUFU_C
Motif
Other DBs
NCBI-GeneID:
137032047
NCBI-ProteinID:
XP_067259640
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All DBs
Position
12:25699314..25738081
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AA seq
940 aa
AA seq
DB search
MPCLRQRLKTGRLATWRILIHTAVTLVSSAMMEGASKSDTTPQASVAAQVPFIHLCTVLE
KIQKTKLRPDKGKILKEFIDSWRNFHTALHKDNSNTTDSFYAAMRLIVPPFERERMAYGI
KENMLAKLYIEVLGLPKNGPEANKLLNYRAPTTSQGEAGDFALTAYFVLKKRCTSQGNLS
IKEVNDFLDSVAINNASKQKDQVKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETIL
QVFHPDATELYNVTTDLNKVCLQLHDPSVSLSEVSIDLFSAFKPMLAAVANIRQIEKQMG
NRPFYIETKLDGERIQLHKAGDVYKYYTRNSYEYTQQFGASPLEGSLTPYIHNVFKPHVV
NCILDGEMMAYNPKTETFMQKGSKFDIKKLMDDSELQTCFCVFDVLLVNNQKFGNEPLKK
RYETLETVFTPIKGRIQQVTKSEGKTMQEVVNFLNEAIDNLEEGIMIKDPMSIYKPDKRG
EGWLKIKPEYVDGLMDELDLLIVGGYWGKGRRSGMLSHFLCAVAEVPSPGEKPTVFHTLC
RIGSGYTMKELYDLGLKLAKHWKVYNKNNPPAAILCGTEKPEVYIEPRNSVIIQVKAAEI
VSSDMYKTNCTLRFPRIERIREDKEWHQCMTLTDLSQFRSRASGKLASRHLHIQEDQPEK
KKRKFVAKPKKTIGVISHFKSQDLSAVAKETDMFEDVEFCVINGDDEYSKADLEKGVARC
GGIVVQNPGKDTYCVIAAVQNMRVKNLISSDQHDVVWAAWLVECLENKQVIPWQPRHMIH
MSPSTRDHFAKEYDQYGDSYYVDTDEQQLLEVFERIGPTQAKCPSVARIEAENSWDDLPT
SIFRPYSAYFDRCADLGDPKSIIRGTCLDTRALEFRFHGGTVVEKLKEGISHVIAEGERR
ALDLKTLRRLYTKKFKIVRESWVTDSIKAGHVEDEIDYLI
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgccatgtctccggcagcgtctgaagactggaaggctagccacatggaggattttgatt
cacaccgcagtgacactggtatcttctgcaatgatggaaggagcctcaaaaagtgatacc
acaccacaagcctctgttgctgcacaagttccgttcatccacctctgcacagttctggag
aagattcaaaagactaaactacgaccagacaaaggcaaaatcctaaaggagtttatagat
tcatggaggaattttcacacagcacttcacaaggacaattccaacaccacagattcattt
tacgcagcaatgcgtctcattgtgcctccatttgagcgagagagaatggcttacggtata
aaagagaacatgcttgccaaactgtatattgaggttttaggcttacctaaaaatggacct
gaggcaaacaaacttctaaattacagagctccaaccacatctcaaggagaagcaggtgac
tttgcccttacagcctactttgtcctgaaaaaaaggtgcacaagtcaggggaatttaagc
attaaggaagtcaatgacttcttggattctgtagctatcaacaatgccagcaaacagaag
gatcaagtgaagaaaagccttttgcatctaataactcagagctcagctttggaacagaag
tggctcattcgaatgatcctcaaggatatgaaacttggcattagcaaggagacaattctt
caggttttccatccagatgcaacagaactctacaatgtcaccacagatctgaataaagtg
tgcctacaacttcatgatccatctgtgtccctcagtgaggtctccattgatctgttttct
gcatttaaaccaatgctggctgctgttgccaacatcagacagatagagaagcaaatgggc
aaccggccattctatattgagacaaagctcgatggtgaacgcattcagctgcacaaagct
ggagatgtttacaaatattatacaaggaactcttatgagtacacgcagcagtttggagct
tctccactagagggctccctcacgccatacattcacaatgtcttcaaacctcatgtggtg
aactgcatactggatggagagatgatggcttataaccctaaaactgagaccttcatgcag
aagggcagtaagtttgatattaaaaagctgatggatgactctgagttgcaaacctgtttt
tgtgtatttgatgtcttgttagtgaacaatcagaagtttggaaatgaacctctcaagaag
cgctacgaaactcttgagactgtcttcacccccatcaaaggccgtatacagcaggtcacc
aaatctgaaggcaaaaccatgcaagaagtagtgaatttcctcaatgaagccattgacaat
ctggaagaggggattatgattaaggatcccatgtccatctacaaaccggataaacgtggt
gaaggatggctgaaaattaagcctgaatatgtggacggtctgatggatgaactcgatctg
ctgatagtgggaggctactggggtaaaggcaggagaagcgggatgctctctcattttctc
tgtgcggtagcagaggtgccaagtcctggggagaagcctacagtattccacaccctctgc
cgcattggatcaggctacactatgaaagaactgtacgatcttggtctgaagttagccaaa
cattggaaagtttacaacaaaaataatcctccagcagccattttgtgtggaacagaaaaa
ccagaggtttacatagaaccacgcaactcagtcatcatacaggtcaaagcggcagagatc
gtttctagtgatatgtataaaaccaactgcacattgcgtttccccagaatagaaagaatc
agagaagacaaagagtggcatcagtgcatgaccttgaccgacctgagtcagttccgctcc
agggcttctggtaagctggcatccagacatctgcacatccaagaggaccaacctgaaaaa
aagaagcgcaaatttgtagccaagcccaagaagaccatcggagtcattagccactttaaa
tctcaggatttatcagcagtcgccaaagagacggatatgtttgaagatgttgagttttgc
gtgataaatggcgatgacgaatattccaaggcagatcttgagaaaggtgtggcccgttgt
ggaggcattgttgtgcaaaaccctggaaaagacacgtattgtgtgattgcagctgtgcag
aacatgagagtcaagaacctcatttcttcagaccagcatgatgtggtgtgggctgcttgg
cttgtggagtgtctggaaaataagcaggttataccatggcaaccacgtcacatgatccat
atgtcaccctccacaagggaccacttcgctaaagagtatgatcagtatggggacagttat
tatgttgacacagatgaacagcagctgttggaagtctttgaaaggattggccccacacaa
gctaaatgtccgtctgtggctcggatagaagcagagaattcctgggatgacttgcccact
agcatttttaggccttacagtgcatactttgaccggtgtgctgacttaggagatccgaaa
tccattatccggggtacatgtttggacacacgtgccttagaattccgatttcatggtggt
acagttgtggaaaaactgaaggaaggaatctcacatgtcatagcagaaggtgagagaagg
gctttggacttaaagacactgagacgactttatactaagaagtttaaaattgttcgggaa
tcttgggtgaccgattccatcaaagcaggccacgtagaagatgagatcgactaccttata
taa
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