KEGG   Clostridium estertheticum: A7L45_19460
Entry
A7L45_19460       CDS       T04811                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ceu  Clostridium estertheticum
Pathway
ceu03030  DNA replication
ceu03410  Base excision repair
ceu03420  Nucleotide excision repair
ceu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ceu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A7L45_19460
   03410 Base excision repair
    A7L45_19460
   03420 Nucleotide excision repair
    A7L45_19460
   03430 Mismatch repair
    A7L45_19460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ceu03032]
    A7L45_19460
   03400 DNA repair and recombination proteins [BR:ceu03400]
    A7L45_19460
Enzymes [BR:ceu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A7L45_19460
DNA replication proteins [BR:ceu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A7L45_19460
DNA repair and recombination proteins [BR:ceu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A7L45_19460
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A7L45_19460
   MMR (mismatch excision repair)
    DNA ligase
     A7L45_19460
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A7L45_19460
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase Nlig-Ia BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT BRCT_2 RNA_ligase HHH_5 RUBY_RBDX HHH Zn_ribbon_NUD DUF7340 MJ0401 DUF4796_N MTR4_beta-barrel RNA_lig_T4_1 Auto_anti-p27 DUF211
Other DBs
NCBI-ProteinID: APC42782
UniProt: A0A1J0GPE5
LinkDB
Position
complement(4227236..4229230)
AA seq 664 aa
MNDEDRINEIKNIINYHSDRYYNQDNPEISDYEYDQMMLELKELEKEHPELITLDSPTQR
VGGSAKRKGGVLVKHNVPMLSLQDVFAKEEVYAYVNKMIEELDDPTFVVEFKIDGLSMSL
RYVDGNLTVAVTRGDGIIQGEDVTENAKVIKDVVKKLKDKVPYLEIRGEVYMSNASFDKI
NEQQELLGKKIFANPRNCAAGTLRQLDSKITKERGISLFIFNIQDIKGIEFKTHTEGYEW
LKKQGIKVIENYVKCKTADEVWSVIQDIGEKRGTLAYDIDGVVIKIDNLEDRKELGNTSK
VPKWAIAYKFPPEEKETKLLDIEVSVGRTGRITPTAIFEPIRLCGTSVSRAILHNQDFID
DLDIRIGDIIVVYKSGEIIPKIKSVVKEKRIEGSKEFKIPEICPVCGAPTVREKDTADIK
CINPNCLAQLERRIINFVGRTAMDIKGFGSAYVKELIRLKYIKDIADVYSLFNYREELVD
QGIIGKEKNTDKLLDAIEKSKGNEAQMLLTGLGIPNIGKVAAKSIMKHYKSIEDLQNTSL
EELQDVSDIGEISGLCILKFFEDNKNREVISRLKDYGVNMAVGDVTSEDNKFDGLTFVVT
GTLTTIGRNEATEMIESHGGKVSGSVSKKTSYVLAGENAGSKLTKAQELGIEVISEEELV
NMLK
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgaatgatgaagatagaattaatgaaattaaaaatataattaattatcatagtgataga
tattataatcaggataatccagaaatatcagattatgaatatgatcaaatgatgttagaa
cttaaagagctagaaaaagagcacccagaacttattaccttagattctccaactcaaaga
gtaggtggaagtgctaaaaggaaaggtggggtcctggtaaaacataatgttccaatgctt
agcttgcaagatgtatttgcaaaagaagaggtatatgcttatgtaaataaaatgattgag
gaactggatgatccaacatttgttgtagaatttaaaattgatggtttgtcaatgtctctg
cgttatgtagatggtaacttaacagtggctgtgaccaggggtgatggaatcattcaaggc
gaggatgtcactgaaaatgctaaagtaattaaggatgttgtaaagaaactgaaagataaa
gttccctaccttgaaattcgtggagaagtatatatgtcaaatgcatcatttgataaaatt
aatgaacaacaagagttattaggtaaaaagatatttgcaaatccaagaaattgtgctgcc
ggtacattaaggcagttagatagtaagataacaaaagaaagaggaatatctctattcatt
tttaatatccaagatatcaaaggaattgaatttaaaacacatacagagggttatgaatgg
ttaaaaaagcagggaataaaggtcattgaaaattatgtgaaatgtaaaacagctgatgaa
gtgtggagtgttattcaagatattggagagaaaagaggaaccctagcatatgatattgac
ggagttgttataaaaattgataatttggaagataggaaagaacttggaaacacatcgaaa
gttcctaaatgggctatagcctataaatttcctccagaagaaaaagaaacgaaattactt
gatattgaagtatcagtagggagaaccggtagaattactcctacagcaatatttgagccg
attcgtttatgtggaacatcagtatcaagagcaatccttcataaccaagattttatcgat
gatttagatataaggattggggacataattgttgtttataagtcaggagagataatccca
aaaatcaagtctgtagtgaaagaaaaacgtattgagggatcaaaggaatttaaaattcca
gagatttgcccagtttgtggagcaccaacagtgcgggaaaaagatactgctgacatcaaa
tgtataaaccctaattgtttggcacaattagaaagacgtataattaattttgtaggcagg
actgctatggacataaaaggttttggcagcgcatatgttaaggaacttattcgtttgaaa
tacataaaagatattgcggatgtgtattctttatttaattatcgcgaggaacttgtcgat
cagggtataattggaaaagaaaaaaatacagataagttattagatgctatagaaaagtca
aagggaaatgaagcacaaatgttgcttacaggccttggtattccgaacattggaaaagtg
gcagcgaaaagtataatgaaacattataaatctattgaagacttgcaaaatacgtcttta
gaagaattgcaagatgtctcggatataggtgaaataagtggcttgtgtatattgaaattt
tttgaagataataaaaatagagaagtaataagtagattaaaagattatggagttaatatg
gctgtaggggatgtcacaagcgaggataataagtttgatggattaactttcgttgtaact
ggaacattaactactataggccgaaatgaggccacggaaatgatagagagtcatggcgga
aaggtatcgggctccgtttctaagaaaacaagttatgtgttagcaggagagaatgctgga
agtaaacttacgaaagcgcaagagttaggaattgaagttatatctgaagaagaattggta
aatatgttaaaatag

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